View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17993_low_3 (Length: 446)
Name: NF17993_low_3
Description: NF17993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17993_low_3 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 36383627 - 36383202
Alignment:
| Q |
1 |
taagggactttagcgtagaggttgcataagtaggacatacaatactagaaagatcacatgttatgttgtttacctataataaatagaattatgtgttttt |
100 |
Q |
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| T |
36383627 |
taagggcctttagagtagaggttgcataagtaggacataccgtactagaaagatcacatgttatgttgtttacctataataaatagaattatgagttttt |
36383528 |
T |
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| Q |
101 |
gaatgttcaataaaattttatgcttgagtattttcatttatggtgtgaccagaaagcaagttctatatttcatatgaattgtagtttgttgtgtttttgt |
200 |
Q |
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| T |
36383527 |
gaatgttcaataaaattttaggcttgaga-----------------gaccagaaagcaagttctatatttcatatgaattgtagtttgttgtgtttttgt |
36383445 |
T |
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| Q |
201 |
ctaaaccccagtcccacatcgaccagttgacaagtaaaaaacctagtggttaaattcgaagagagtctaattgatgaatctacagttttgagttgtggta |
300 |
Q |
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| T |
36383444 |
ctaaaccccagtcccacatcgaccagttgacaagtaaaaaacctagtggttaaattcaaagaga--ctaattgatgaatctacagttttgtgttgtg-ta |
36383348 |
T |
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| Q |
301 |
tcctggaaatattgtttgtatcaagaatcaaaaagatctctttcagtcaccatctatttcacctgctgtttatgtctgtttctatgtatacaaatcacaa |
400 |
Q |
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| T |
36383347 |
tcctggaaatattgtttgtatcaagaatcaaaaagttctctttcagtcaccatctatttcacctgctgtttatgtctgtttctatgtatacaaatcacaa |
36383248 |
T |
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| Q |
401 |
gagcccacatcgaccagttcacaggtaaaaatggggcactttagtc |
446 |
Q |
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| T |
36383247 |
gagcccacatcgaccagttcacaggtaaaaatggggcactttagtc |
36383202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 429
Target Start/End: Complemental strand, 36375922 - 36375873
Alignment:
| Q |
380 |
ttctatgtatacaaatcacaagagcccacatcgaccagttcacaggtaaa |
429 |
Q |
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| T |
36375922 |
ttctatgtatacaaatcataagaacccacatcgaccagttcacaagtaaa |
36375873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 432
Target Start/End: Complemental strand, 36379096 - 36379044
Alignment:
| Q |
380 |
ttctatgtatacaaatcacaagagcccacatcgaccagttcacaggtaaaaat |
432 |
Q |
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| T |
36379096 |
ttctacgtatacaaatcataagagcccacatcgactagttcacaagtaaaaat |
36379044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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