View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17993_low_6 (Length: 315)
Name: NF17993_low_6
Description: NF17993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17993_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 38933264 - 38933027
Alignment:
| Q |
17 |
agtattataggtagcatgcaccttttaaattagaggaatgggttaagacagagagaagcagagaaagtgttagaaatcagaccctacaaaaagttatacg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38933264 |
agtattataggtagcatgcaccttttaaattagaggaatgggttaagacagagagaagcagagaaagtgttagaaatcagaccctacaaaaagttctacg |
38933165 |
T |
|
| Q |
117 |
gcaaatggacaatttttccagtaatggatggatagatattagatagaggggtctaaaactacagttccttctttcttagtcggccattcataaatactag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38933164 |
gcaaatggacaatttttccagtaatgga-----------tagatagaggggtctaaaactacagttccttctttcttagtcggccattcataaatactag |
38933076 |
T |
|
| Q |
217 |
gtgggtccaaaccataacaaaacaaaatatatgacataacacaaacaca |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38933075 |
gtgggtccaaaccataacaaaacaaaatatatgacataacacaaacaca |
38933027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University