View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17993_low_9 (Length: 280)
Name: NF17993_low_9
Description: NF17993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17993_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 53562207 - 53561933
Alignment:
| Q |
1 |
cagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattccatgatcttacaccaaaccaccttcacccc |
100 |
Q |
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| T |
53562207 |
cagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattccatgatcttacaccaaaccaccttcacccc |
53562108 |
T |
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| Q |
101 |
ttcacaatgaagaaataaatgagtagcatcttcagccgcgttatt----------cactcataagatgtatccggcgggaaacaattcctaatagctaga |
190 |
Q |
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| T |
53562107 |
ttcacaatgaagaaataaatgagtagcatcttcagccgtgttattacaccacacacactcataagatgtatccggtgggaaacaattcctaatagctaga |
53562008 |
T |
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| Q |
191 |
ttaatctttgtaggaattctatcatagaggagtttccacgagaagacaacgaccttggtc-gcgccggactcttc |
264 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
53562007 |
ttaatcttcgtaggaattctatcatggaggagtttccacgagaagacaacgaccttggacggcgccggactcttc |
53561933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 38185500 - 38185570
Alignment:
| Q |
3 |
gctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattccat |
73 |
Q |
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| T |
38185500 |
gctcaattccaacattcccacgtgataaacagattcggtggaattataaaattgaattccagccactccat |
38185570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 4903758 - 4903679
Alignment:
| Q |
6 |
ccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattccatgatcttacacca |
85 |
Q |
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| T |
4903758 |
ccattccaacattgccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataagcttacacca |
4903679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 1557239 - 1557167
Alignment:
| Q |
1 |
cagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattccat |
73 |
Q |
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| T |
1557239 |
cagctccaatccaacattcccacataataaacagatttggggggattaaaaaattaaagtccagccagtccat |
1557167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 22153799 - 22153878
Alignment:
| Q |
6 |
ccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattccatgatcttacacca |
85 |
Q |
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| T |
22153799 |
ccattccaacattcccgcataataaacagattaagagggattaaaaaattaaattccaaccactccataagcttacacca |
22153878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 22209714 - 22209793
Alignment:
| Q |
6 |
ccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattccatgatcttacacca |
85 |
Q |
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|||||||||||||||| || |||||| ||||| | || |||| ||||||||| |||||||| ||||| | ||||||||| |
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| T |
22209714 |
ccattccaacattcccgcataataaacagattaagagggattaaaaaattaaattccaaccactccataagcttacacca |
22209793 |
T |
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