View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17994_low_1 (Length: 409)

Name: NF17994_low_1
Description: NF17994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17994_low_1
NF17994_low_1
[»] chr1 (7 HSPs)
chr1 (1-402)||(29422938-29423339)
chr1 (1-291)||(29453372-29453662)
chr1 (1-289)||(29443389-29443677)
chr1 (1-288)||(29467848-29468135)
chr1 (288-402)||(29443705-29443828)
chr1 (309-385)||(29468200-29468276)
chr1 (344-399)||(29453744-29453799)
[»] chr2 (43 HSPs)
chr2 (1-239)||(12018956-12019194)
chr2 (9-240)||(9320817-9321048)
chr2 (9-240)||(9284266-9284497)
chr2 (1-240)||(9328434-9328673)
chr2 (1-240)||(11987555-11987794)
chr2 (1-240)||(10352944-10353183)
chr2 (19-240)||(9315854-9316075)
chr2 (132-240)||(9061358-9061466)
chr2 (288-402)||(12012939-12013054)
chr2 (60-236)||(9364467-9364643)
chr2 (1-240)||(12012614-12012856)
chr2 (72-239)||(10335692-10335859)
chr2 (132-240)||(9291757-9291865)
chr2 (131-239)||(8579703-8579811)
chr2 (288-402)||(11987877-11987992)
chr2 (294-402)||(9364242-9364351)
chr2 (132-240)||(8573725-8573833)
chr2 (1-228)||(12006186-12006413)
chr2 (337-402)||(9291563-9291628)
chr2 (294-402)||(9315644-9315753)
chr2 (290-402)||(9320596-9320709)
chr2 (132-233)||(10371679-10371780)
chr2 (291-402)||(12019282-12019391)
chr2 (76-194)||(7115788-7115906)
chr2 (1-117)||(10347743-10347859)
chr2 (132-240)||(10347596-10347707)
chr2 (9-117)||(8573581-8573689)
chr2 (108-240)||(9065789-9065921)
chr2 (140-240)||(9274335-9274435)
chr2 (347-402)||(12006543-12006598)
chr2 (301-402)||(9066038-9066138)
chr2 (1-117)||(9061209-9061325)
chr2 (1-117)||(9065661-9065777)
chr2 (131-191)||(16268952-16269012)
chr2 (134-240)||(10341184-10341293)
chr2 (339-402)||(10352735-10352798)
chr2 (288-358)||(10371508-10371579)
chr2 (301-402)||(8573931-8574035)
chr2 (243-284)||(9065936-9065977)
chr2 (297-393)||(9284606-9284703)
chr2 (337-382)||(9295097-9295142)
chr2 (337-389)||(9274200-9274252)
chr2 (290-357)||(9328260-9328328)
[»] chr8 (2 HSPs)
chr8 (9-240)||(41966781-41967015)
chr8 (296-402)||(41967132-41967239)
[»] chr7 (5 HSPs)
chr7 (132-239)||(45230244-45230351)
chr7 (132-239)||(45243505-45243613)
chr7 (132-240)||(45237761-45237869)
chr7 (1-117)||(45237908-45238024)
chr7 (9-117)||(45243657-45243765)
[»] chr3 (3 HSPs)
chr3 (294-402)||(37462095-37462205)
chr3 (1-117)||(37462447-37462563)
chr3 (133-234)||(37462306-37462410)
[»] scaffold0667 (2 HSPs)
scaffold0667 (294-402)||(4070-4179)
scaffold0667 (131-239)||(4289-4394)
[»] chr4 (3 HSPs)
chr4 (1-233)||(26574700-26574935)
chr4 (137-239)||(561019-561121)
chr4 (339-398)||(26574525-26574584)


Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 29423339 - 29422938
Alignment:
Q  1 tatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29423339 tatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatg 29423240  T
Q  101 gaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatca 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29423239 gaggtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatca 29423140  T
Q  201 agccatgatttgtgttggaagtcttgtatcaccttccttcgctaggaaggagaatcgcacaagcaagaaaaggtacttcttattgattatcaattcaatg 300  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29423139 agccatgatttgtgttggaagtcttgtatcaccttccttccctaggaaggagaatcgcacaagcaagagaaggtacttcttattgattatcaattcaatg 29423040  T
Q  301 gaccgatcatatgatatatctatttaaactctgttaaaaggtcaaattgaattcttattatacgacaatgattctctaattattttgaagtctctacctt 400  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29423039 gaccgatcatatgatatatctagttaaactctgttaaaaggtcaaattgaattcttattatatgacaatgattctctaattattttgaagtctctacctt 29422940  T
Q  401 tg 402  Q
    ||    
T  29422939 tg 29422938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 29453372 - 29453662
Alignment:
Q  1 tatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatg 100  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||| |||||||  |||||||||||| ||||| ||| ||||||||||||||||||||    
T  29453372 tatggatgtagagatagctggtgtgaactttttactttggcggaatcatgtttcattttacctttgaaaactttgtggcctttagcttattcgagcgatg 29453471  T
Q  101 gaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatca 200  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29453472 gaagtatggttctgttggaagtagattgtgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttgaaggaattcctaatttcgatca 29453571  T
Q  201 agccatgatttgtgttggaagtcttgtatcaccttccttcgctaggaaggagaatcgcacaagcaagaaaaggtacttcttattgattatc 291  Q
    ||| |||||||||||||||||||||||  ||||||||||| | ||||| ||||||   |||||||||| |||||||| |||||| ||||||    
T  29453572 agctatgatttgtgttggaagtcttgtgccaccttccttccccaggaaagagaattatacaagcaagagaaggtactccttatttattatc 29453662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 29443389 - 29443677
Alignment:
Q  1 tatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||| |||||||||| |||||| |||||||||||||     
T  29443389 tatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgata 29443488  T
Q  101 gaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatca 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||| |||| ||||||||||||   | |||||    
T  29443489 gaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatca 29443588  T
Q  201 agccatgatttgtgttggaagtcttgtatcaccttccttcgctaggaaggagaatcgcacaagcaagaaaaggtacttcttattgatta 289  Q
     ||||| |||||||||||||||||||||  |||||| ||| | |||||||||||||  |||||||||| ||||||||||||||||||||    
T  29443589 tgccatcatttgtgttggaagtcttgtacaaccttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgatta 29443677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 29467848 - 29468135
Alignment:
Q  1 tatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatg 100  Q
    ||||||||||||||||| ||| ||||||||||||||||||    |||||||||||| ||||  ||| || ||||||||| ||||| ||||||||||||||    
T  29467848 tatggatgtagagatagttggcgtaaactttttactttggttagatcgtgtttcactttacagttggaatctttgaggcctttaggttattcgagcgatg 29467947  T
Q  101 gaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatca 200  Q
    ||||||||||||||||  ||||||| | ||||||| |||||||||||||||||||||||||||| |||| || |||| ||||||||||||||||  || |    
T  29467948 gaagtatggttctgtttgaagtagaccatgagaagttgttttggtatgatctcaagagtgaacatgttaattatgttgaaggaattcctaatttgaatga 29468047  T
Q  201 agccatgatttgtgttggaagtcttgtatcaccttccttcgctaggaaggagaatcgcacaagcaagaaaaggtacttcttattgatt 288  Q
    ||| |||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  29468048 agctatgatttgtgttggaagtcttgtaccaccttccttccctaggaacgagaatcgcacaagcaagagaaggtacttcttattgatt 29468135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 288 - 402
Target Start/End: Original strand, 29443705 - 29443828
Alignment:
Q  288 tatcaattcaatggaccgatcatatgatatatctatttaaactc--tgttaaaaggtcaaat-------tgaattcttattatacgacaatgattctcta 378  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||  ||||||||||||||||       ||||||||||| ||| ||||| |||||||||    
T  29443705 tatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggacaaggattctcta 29443804  T
Q  379 attattttgaagtctctacctttg 402  Q
    ||||||||||||||||||||||||    
T  29443805 attattttgaagtctctacctttg 29443828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 309 - 385
Target Start/End: Original strand, 29468200 - 29468276
Alignment:
Q  309 atatgatatatctatttaaactctgttaaaaggtcaaattgaattcttattatacgacaatgattctctaattattt 385  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29468200 atatgatatatgcagttaaactctgttaaaaggtcaaattgaattcttattataggacaatgattctctaattattt 29468276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 399
Target Start/End: Original strand, 29453744 - 29453799
Alignment:
Q  344 aaattgaattcttattatacgacaatgattctctaattattttgaagtctctacct 399  Q
    |||||||||||||||||||  |||| ||||||||||||| ||||||||||||||||    
T  29453744 aaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 29453799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 43)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 12018956 - 12019194
Alignment:
Q  1 tatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatg 100  Q
    ||||||||||||||||| |||||||||||||||||||||   ||||||||||||   |||||||| | |  |||||| | ||||| ||||||||| ||||    
T  12018956 tatggatgtagagatagttggtgtaaactttttactttgatggaatcgtgtttcgttttaccttttagatttttgagccctttaggttattcgagtgatg 12019055  T
Q  101 gaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatca 200  Q
    |||  | |||| ||||| | ||| ||| | | | |||| ||||||||||| | |||||| | |||||||||| |||| |||||||||||||||||||| |    
T  12019056 gaaaaaaggttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagttagttatgttgaaggaattcctaatttcgatga 12019155  T
Q  201 agccatgatttgtgttggaagtcttgtatcaccttcctt 239  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  12019156 agccatgatttgtgttggaagtcttgtaccaccttcctt 12019194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 9321048 - 9320817
Alignment:
Q  9 tagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatggaagtatg 108  Q
    ||||||||| |||||||||||||||||| |||   ||||||||| |   |||||||||||| ||||||||| ||||| ||||||||| |||||||  | |    
T  9321048 tagagatagttggtgtaaactttttactatggttaaatcgtgttacgatttacctttgaaatctttgaggcctttaggttattcgagtgatggaaaaaag 9320949  T
Q  109 gttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatga 208  Q
    ||| |||||   |||||| ||||||||||||||||||||||| | ||||||| ||||||||||| |||| ||||||||||| ||||| ||  ||  |||     
T  9320948 gttttgttgagggtagatgctgagaagctgttttggtatgatttgaagagtgcacaagttagttatgttgaaggaattcctgatttccatggagttatgt 9320849  T
Q  209 tttgtgttggaagtcttgtatcaccttccttc 240  Q
    |||||||||||||||||||  |||||||||||    
T  9320848 tttgtgttggaagtcttgtcccaccttccttc 9320817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 9284266 - 9284497
Alignment:
Q  9 tagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatggaagtatg 108  Q
    ||||||||| ||||||||| ||||||||||||   ||||  | ||||| |||| ||||||| ||||||||| ||||| |||||| || ||||| |||| |    
T  9284266 tagagatagttggtgtaaaatttttactttggttaaatcacggttcactttacgtttgaaatctttgaggcctttaggttattctagtgatggtagtaag 9284365  T
Q  109 gttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatga 208  Q
    ||||| ||  || |||||  | |||||||| ||||||||||| | |||||||| ||||||| || |||| |||||||||||||||| ||| |||| ||||    
T  9284366 gttctattagaaatagattgtaagaagctggtttggtatgatttgaagagtgagcaagttatttatgttgaaggaattcctaatttggatgaagctatga 9284465  T
Q  209 tttgtgttggaagtcttgtatcaccttccttc 240  Q
    ||||||||| |||||||||  |||||||||||    
T  9284466 tttgtgttgaaagtcttgtgccaccttccttc 9284497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 9328673 - 9328434
Alignment:
Q  1 tatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatg 100  Q
    ||||||| ||||||||| |||||||||||||||||| |||   |||||||||||   |||||||||||| ||||||||| ||||| ||||| ||| ||||    
T  9328673 tatggatatagagatagttggtgtaaactttttactatggttaaatcgtgtttccatttacctttgaaatctttgaggcctttaggttatttgagtgatg 9328574  T
Q  101 gaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatca 200  Q
    |||  | |||| |||||   || |||  |||||||||||||| ||||||| | | ||||| ||||||||||| |||| ||||||||||| ||||| || |    
T  9328573 gaaaaaaggttttgttgagggtggattttgagaagctgtttttgtatgattttaggagtgcacaagttagttatgttgaaggaattcctgatttccatga 9328474  T
Q  201 agccatgatttgtgttggaagtcttgtatcaccttccttc 240  Q
     |  ||| ||| |||||||||||||||| |||||||||||    
T  9328473 tgttatgttttctgttggaagtcttgtaccaccttccttc 9328434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 11987555 - 11987794
Alignment:
Q  1 tatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatg 100  Q
    ||||||||||||||||| |||||||||||||| || |||   ||||||||||||   |||||||||||| ||||||| | ||| | ||||||||| ||||    
T  11987555 tatggatgtagagatagttggtgtaaacttttcacattgatggaatcgtgtttcgttttacctttgaaatctttgagccctttgggttattcgagtgatg 11987654  T
Q  101 gaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatca 200  Q
    | |  | |||| ||||| |  |  |||   |||||||| ||||||||||| | |||||||||||| |||||| |||| | ||||||||||| |||||| |    
T  11987655 gtaaaaaggttttgttggatcttaatcacaagaagctggtttggtatgatttgaagagtgaacaatttagttatgttgacggaattcctaaattcgatga 11987754  T
Q  201 agccatgatttgtgttggaagtcttgtatcaccttccttc 240  Q
    ||| |||||||||||||||||||||||| |||| ||||||    
T  11987755 agctatgatttgtgttggaagtcttgtaccaccctccttc 11987794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10353183 - 10352944
Alignment:
Q  1 tatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatg 100  Q
    |||||||||||||| || |||||||||||||||||| |||   |||| | ||||   ||||||||| || ||||||||||||||| ||||||||| |||     
T  10353183 tatggatgtagagagagttggtgtaaactttttactgtggttaaatcttctttcgatttacctttgcaatctttgaggcttttaggttattcgagtgata 10353084  T
Q  101 gaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatca 200  Q
    |||  | |||| |||||   ||||||  |||||| || |||||||||||| |  ||||| |||||||||||| |||||||| ||||| |||||| ||| |    
T  10353083 gaaaaaaggttttgttgagggtagatgttgagaatctattttggtatgatttggagagtaaacaagttagttatgttcaagaaattcttaatttggatga 10352984  T
Q  201 agccatgatttgtgttggaagtcttgtatcaccttccttc 240  Q
      | |||||||||||||||||||||||| |||||| ||||    
T  10352983 cactatgatttgtgttggaagtcttgtaccaccttacttc 10352944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 9316075 - 9315854
Alignment:
Q  19 tggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatggaagtatggttctgttgc 118  Q
    ||||||||||||||||||||||   | || |||||||| ||| |||||||   ||||| || ||||| |||||| || || ||||||| |||||| |||     
T  9316075 tggtgtaaactttttactttggttaattcatgtttcactttatctttgaattttttgaagcctttaggttattctagtgacggaagtaaggttctattgg 9315976  T
Q  119 aagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttgg 218  Q
    || |||||  | ||||||||||||||| |||  | | |||||||||||||| || |||| |||||||| ||||||| ||| |||| |||||||||||||     
T  9315975 aaatagattgtaagaagctgttttggtgtgacttgatgagtgaacaagttatttatgttgaaggaatttctaatttggatgaagctatgatttgtgttga 9315876  T
Q  219 aagtcttgtatcaccttccttc 240  Q
    |||||||||| |||||||||||    
T  9315875 aagtcttgtaccaccttccttc 9315854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 9061358 - 9061466
Alignment:
Q  132 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatca 231  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| |||| ||| ||| |||||||||||| ||||||    
T  9061358 gaagctgttttggtatgatctcaagagtgaacaagttagttatgttgaaggaattcctaattttgatgaagctatgttttatgttggaagtctcgtatca 9061457  T
Q  232 ccttccttc 240  Q
    |||| ||||    
T  9061458 cctttcttc 9061466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 288 - 402
Target Start/End: Original strand, 12012939 - 12013054
Alignment:
Q  288 tatcaattcaatggaccgatcatatgatatatctatttaaactc--tgttaaaaggtcaaattgaattcttattatacgacaatgattctctaattattt 385  Q
    ||||||||||||||||| |||||||||||||| || ||| ||||  ||||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||    
T  12012939 tatcaattcaatggacccatcatatgatatatgtagttagactccatgttaaa-ggtcaaattgaattcttattataggacaaggattctctaattactt 12013037  T
Q  386 tgaagtctctacctttg 402  Q
    |||||||||||||||||    
T  12013038 tgaagtctctacctttg 12013054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 60 - 236
Target Start/End: Complemental strand, 9364643 - 9364467
Alignment:
Q  60 acctttgaaagctttgaggcttttagcttattcgagcgatggaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagt 159  Q
    |||||||||| | ||||||| ||||| ||||||||| |||||||  | |||| | ||| || |||||| | |||||||||||||||| ||||||||||||    
T  9364643 acctttgaaatcgttgaggcctttaggttattcgagtgatggaaagaaggttttattggaaatagatcgtaagaagctgttttggtacgatctcaagagt 9364544  T
Q  160 gaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatcaccttc 236  Q
    ||| | |||| | |||||| ||||||||||||| |  || |||| |||||||||||||| ||||||||| |||||||    
T  9364543 gaaaacgttactagtgttccaggaattcctaatatgaatgaagctatgatttgtgttggtagtcttgtaccaccttc 9364467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 12012614 - 12012856
Alignment:
Q  1 tatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatg 100  Q
    ||||| |||| |||||| ||||||||||||||||||||||  ||||||||||||   |||||||||| |  |||||| | ||| | ||||||||  ||||    
T  12012614 tatggttgtaaagatagttggtgtaaactttttactttggtggaatcgtgtttcgttttacctttgatatttttgagacctttgggttattcgaatgatg 12012713  T
Q  101 gaagtatggttctgtt------gcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaattt 194  Q
    | |  |||||| ||||      | | ||| ||| | |||||||| ||||||||||| | ||||||   |||||||||| |||| ||||||||||||||||    
T  12012714 gtaaaatggttttgtttttgttggaggtaaatcataagaagctggtttggtatgatttgaagagt---caagttagttatgttgaaggaattcctaattt 12012810  T
Q  195 cgatcaagccatgatttgtgttggaagtcttgtatcaccttccttc 240  Q
    |||| |||| |||||||||||||||||||||||| |||| ||||||    
T  12012811 cgatgaagctatgatttgtgttggaagtcttgtaccaccctccttc 12012856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 72 - 239
Target Start/End: Complemental strand, 10335859 - 10335692
Alignment:
Q  72 tttgaggcttttagcttattcgagcgatggaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagt 171  Q
    |||||||| ||||| |||||  || |||||||||| |||||| ||| || | |||  | ||||| |||||||||||||| | |||||||||||| |||||    
T  10335859 tttgaggcctttaggttattgtagtgatggaagtaaggttctattggaaatcgattgtaagaagttgttttggtatgatttgaagagtgaacaaattagt 10335760  T
Q  172 tgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatcaccttcctt 239  Q
    | |||| |||||||||||||||| ||| |  | ||||||||||||||||||||||| |||||||||||    
T  10335759 tatgttgaaggaattcctaatttggatgacactatgatttgtgttggaagtcttgtttcaccttcctt 10335692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 9291865 - 9291757
Alignment:
Q  132 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatca 231  Q
    ||||||||||||||||||| | |||||||||||| |||||| |||| |||||||||||||||| ||| |||| ||||||||||||| ||||||| || ||    
T  9291865 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctacca 9291766  T
Q  232 ccttccttc 240  Q
    |||||||||    
T  9291765 ccttccttc 9291757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 131 - 239
Target Start/End: Original strand, 8579703 - 8579811
Alignment:
Q  131 agaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatc 230  Q
    ||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||| || || | ||||||| ||||||||  ||| || |    
T  8579703 agaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaacccttctacc 8579802  T
Q  231 accttcctt 239  Q
    |||||||||    
T  8579803 accttcctt 8579811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 288 - 402
Target Start/End: Original strand, 11987877 - 11987992
Alignment:
Q  288 tatcaattcaatggaccgatcatatgatatatctatttaaactctgt-taaaaggtcaaattgaattcttattatacgacaatgattctctaattatttt 386  Q
    ||||||||||||||||| ||||| |||||||| || ||||||| | | | |||||||||||||||||| ||||||| ||||| |||| |||||||| |||    
T  11987877 tatcaattcaatggacccatcatgtgatatatgtagttaaactttatgttaaaggtcaaattgaattcctattataggacaaggattttctaattacttt 11987976  T
Q  387 gaagtctctacctttg 402  Q
    ||||||||||||||||    
T  11987977 gaagtctctacctttg 11987992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 294 - 402
Target Start/End: Complemental strand, 9364351 - 9364242
Alignment:
Q  294 ttcaatggaccgatcatatgatatatctatttaaactctgt-taaaaggtcaaattgaattcttattatacgacaatgattctctaattattttgaagtc 392  Q
    ||||||| ||| |||||||||||||| || ||||||||| | | ||||||||||| |||||||||||||| ||||| || |||||||||| |||||||||    
T  9364351 ttcaatgaacccatcatatgatatatgtacttaaactctatattaaaggtcaaatggaattcttattataggacaaggagtctctaattactttgaagtc 9364252  T
Q  393 tctacctttg 402  Q
    | ||||||||    
T  9364251 tatacctttg 9364242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 8573725 - 8573833
Alignment:
Q  132 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatca 231  Q
    ||||||||||||||||||| | |||||||||||||| |||| |||| |||||||||||||||   ||  ||| ||| |||||||||||||||||||| ||    
T  8573725 gaagctgttttggtatgatttgaagagtgaacaagtcagttatgttgaaggaattcctaattggaatgcagctatgttttgtgttggaagtcttgtacca 8573824  T
Q  232 ccttccttc 240  Q
    |||| ||||    
T  8573825 cctttcttc 8573833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 12006186 - 12006413
Alignment:
Q  1 tatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatg 100  Q
    ||||| |||| |||||| |||||||||||||||||||||   | ||||||||||   |||||| ||| | ||||||  | ||||| |||||| || ||||    
T  12006186 tatggttgtaaagatagttggtgtaaactttttactttgatgggatcgtgtttcgttttacctgtgatatctttgatccctttaggttattcaagtgatg 12006285  T
Q  101 gaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatca 200  Q
    |||  |   || ||||  | ||| ||| | |||||||| ||||||||||| | ||||||||| |||||| ||   || | |||||||| ||||||||| |    
T  12006286 gaaaaaaacttttgtttgaggtaaatcataagaagctggtttggtatgatttgaagagtgaagaagttaattacattgagggaattccaaatttcgatga 12006385  T
Q  201 agccatgatttgtgttggaagtcttgta 228  Q
    ||| ||||||||||||||||||||||||    
T  12006386 agcgatgatttgtgttggaagtcttgta 12006413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 337 - 402
Target Start/End: Complemental strand, 9291628 - 9291563
Alignment:
Q  337 aaaggtcaaattgaattcttattatacgacaatgattctctaattattttgaagtctctacctttg 402  Q
    |||||| ||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||    
T  9291628 aaaggttaaattgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 9291563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 402
Target Start/End: Complemental strand, 9315753 - 9315644
Alignment:
Q  294 ttcaatggaccgatcatatgatatatctatttaaactctgtta-aaaggtcaaattgaattcttattatacgacaatgattctctaattattttgaagtc 392  Q
    ||||||||||| |||||||||||||  || ||||||||| |   |||||||||||||||||||||||||| ||||| ||||| ||||||| ||| || ||    
T  9315753 ttcaatggacccatcatatgatataagtagttaaactctatgctaaaggtcaaattgaattcttattataggacaaggattccctaattactttaaattc 9315654  T
Q  393 tctacctttg 402  Q
    ||||||||||    
T  9315653 tctacctttg 9315644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 290 - 402
Target Start/End: Complemental strand, 9320709 - 9320596
Alignment:
Q  290 tcaattcaatggaccgatcatatgatatatctatttaaactctgttaaa-aggtcaaattgaattcttattatacgacaatgattctctaattattttga 388  Q
    ||||||||||||||| ||||||||||||||  | ||||||||| |   | ||||||||||||||| |||||||  ||||| ||| ||||||||| |||||    
T  9320709 tcaattcaatggacccatcatatgatatattaagttaaactctatgctataggtcaaattgaatttttattatcggacaaggatactctaattactttga 9320610  T
Q  389 agtctctacctttg 402  Q
    ||||||||||||||    
T  9320609 agtctctacctttg 9320596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 10371780 - 10371679
Alignment:
Q  132 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatca 231  Q
    ||||||||||||||||||| | ||||||||||||||||||| |||| |||||| | ||||||| ||| | || ||| |||||||||| ||||||||| ||    
T  10371780 gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtacca 10371681  T
Q  232 cc 233  Q
    ||    
T  10371680 cc 10371679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 291 - 402
Target Start/End: Original strand, 12019282 - 12019391
Alignment:
Q  291 caattcaatggaccgatcatatgatatatctatttaaactctgttaaaaggtcaaattgaattcttattatacgacaatgattctctaattattttgaag 390  Q
    |||||||||||||| |||||||||||||| || ||||||||| |   || ||  | | |||||||||||||| ||||| ||||||||||||| |||||||    
T  12019282 caattcaatggacccatcatatgatatatgtagttaaactctatgttaatgt--attggaattcttattataggacaaggattctctaattactttgaag 12019379  T
Q  391 tctctacctttg 402  Q
    ||||||||||||    
T  12019380 tctctacctttg 12019391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 7115788 - 7115906
Alignment:
Q  76 aggcttttagcttattcgagcgatggaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtg 175  Q
    |||| ||||| |||||| || |||||||| | |||||| ||| || |||||  |  ||||||| ||||||||||| | ||||| ||||||||||||||||    
T  7115788 aggcctttaggttattctagtgatggaagcaaggttctattggaaatagattgtaggaagctggtttggtatgatttgaagagcgaacaagttagttgtg 7115887  T
Q  176 ttcaaggaattcctaattt 194  Q
    || ||||||||||||||||    
T  7115888 ttgaaggaattcctaattt 7115906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 10347859 - 10347743
Alignment:
Q  1 tatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatg 100  Q
    ||||||||||||||||| |||||||||||||||||| |||| || |||||||||   ||||||||||||   |||||||   ||  |||||| || ||||    
T  10347859 tatggatgtagagatagttggtgtaaactttttactatggctgagtcgtgtttcgatttacctttgaaattgttgaggcccatatgttattctagtgatg 10347760  T
Q  101 gaagtatggttctgttg 117  Q
    |||||| ||||||||||    
T  10347759 gaagtaaggttctgttg 10347743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 10347707 - 10347596
Alignment:
Q  132 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaat---tcctaatttcgatcaagccatgatttgtgttggaagtcttgta 228  Q
    ||||||||||||||||||| | |||||||||||| |||||| |||| |||||||   ||||||| |  || || | ||| |||||||||||||||||||     
T  10347707 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctcctaatatgaatgaaactatgttttgtgttggaagtcttgtc 10347608  T
Q  229 tcaccttccttc 240  Q
     |||||||||||    
T  10347607 ccaccttccttc 10347596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 8573581 - 8573689
Alignment:
Q  9 tagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatggaagtatg 108  Q
    ||||||||| |||||||||||||||||||| |   |||||||||||||   || ||| ||| ||| ||||| ||||| |||||| || |||||||||| |    
T  8573581 tagagatagttggtgtaaactttttactttcgttaaatcgtgtttcactccacattttaaatcttcgaggcctttaggttattctagtgatggaagtaag 8573680  T
Q  109 gttctgttg 117  Q
    |||||||||    
T  8573681 gttctgttg 8573689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 240
Target Start/End: Original strand, 9065789 - 9065921
Alignment:
Q  108 ggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatg 207  Q
    |||| ||||| | ||||||| | ||||||| |||||||||||| | |||||||||||||||| || |||| ||||| |||||||||   || |  |  ||    
T  9065789 ggttttgttggaggtagatcatcagaagctcttttggtatgatttgaagagtgaacaagttatttatgttgaaggagttcctaattggaatgacactgtg 9065888  T
Q  208 atttgtgttggaagtcttgtatcaccttccttc 240  Q
    |||||||||| |||||||||| || ||||||||    
T  9065889 atttgtgttgaaagtcttgtaccaacttccttc 9065921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 9274435 - 9274335
Alignment:
Q  140 tttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatcaccttcctt 239  Q
    ||||||||||| | ||||||||||||||||||| |||| ||||||||||||| ||| ||  | | || ||||| ||||||||| ||||| |||| |||||    
T  9274435 tttggtatgatttgaagagtgaacaagttagttttgttaaaggaattcctaacttcaatggaactattatttgggttggaagttttgtaccaccctcctt 9274336  T
Q  240 c 240  Q
    |    
T  9274335 c 9274335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 402
Target Start/End: Original strand, 12006543 - 12006598
Alignment:
Q  347 ttgaattcttattatacgacaatgattctctaattattttgaagtctctacctttg 402  Q
    ||||||||||||| || ||||| ||||||||||||| |||||||||||||||||||    
T  12006543 ttgaattcttattttaggacaaggattctctaattactttgaagtctctacctttg 12006598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 402
Target Start/End: Original strand, 9066038 - 9066138
Alignment:
Q  301 gaccgatcatatgatatatctatttaaactctgttaaaaggtcaaattgaattcttattatacgacaatgattctctaattattttgaagtctctacctt 400  Q
    |||| |||||||||||||| ||  |||||| || | || |||||||||||| |||||| ||| || || ||||||||||||| |||||||| ||||||||    
T  9066038 gacccatcatatgatatatgtagctaaactttgctcaa-ggtcaaattgaagtcttatcataggataaagattctctaattactttgaagtttctacctt 9066136  T
Q  401 tg 402  Q
    ||    
T  9066137 tg 9066138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 9061209 - 9061325
Alignment:
Q  1 tatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatg 100  Q
    ||||||| ||||||||| ||||||||||||||||||||||   ||||||||||||  | ||||||| |   ||||||||  |||  |||||| || ||||    
T  9061209 tatggatctagagatagttggtgtaaactttttactttggttaaatcgtgtttcaattcacctttggactttttgaggccgttatgttattctagtgatg 9061308  T
Q  101 gaagtatggttctgttg 117  Q
    || ||| ||||||||||    
T  9061309 gaggtaaggttctgttg 9061325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 9065661 - 9065777
Alignment:
Q  1 tatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatg 100  Q
    ||||||| ||||||||| ||||||||||||||||||||||   |||| ||||||   | || ||||| ||||| ||||| | ||| ||||||  | ||||    
T  9065661 tatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttccattcacatttgacagcttcgaggcctctaggttattccggtgatg 9065760  T
Q  101 gaagtatggttctgttg 117  Q
    |||||| ||||||||||    
T  9065761 gaagtaaggttctgttg 9065777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 16269012 - 16268952
Alignment:
Q  131 agaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaa 191  Q
    ||||| |||||||||||||| | |||||||||| |||||||| |||| |||||||||||||    
T  16269012 agaagttgttttggtatgatttgaagagtgaacgagttagttatgttgaaggaattcctaa 16268952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 10341293 - 10341184
Alignment:
Q  134 agctgttttggtatgatctcaagagtgaacaagttag---ttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatc 230  Q
    ||||||||||||||||| |  ||||||||||||||||   || |||| ||||||||||| |||| ||| | || ||||| |||||||||||| | ||| |    
T  10341293 agctgttttggtatgatttggagagtgaacaagttagttattatgttgaaggaattcctgatttggatgatgctatgatgtgtgttggaagtatagtacc 10341194  T
Q  231 accttccttc 240  Q
    ||||| ||||    
T  10341193 acctttcttc 10341184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 402
Target Start/End: Complemental strand, 10352798 - 10352735
Alignment:
Q  339 aggtcaaattgaattcttattatacgacaatgattctctaattattttgaagtctctacctttg 402  Q
    |||||||||||||||||||| ||| || || ||||||||||||| ||||| |||| ||||||||    
T  10352798 aggtcaaattgaattcttatcataggataaggattctctaattactttgacgtctttacctttg 10352735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 358
Target Start/End: Complemental strand, 10371579 - 10371508
Alignment:
Q  288 tatcaattcaatggaccgatcatatgatatatctatttaaactctgt-taaaaggtcaaattgaattcttat 358  Q
    ||||| ||||||||| | ||||||| ||||||  | ||||||||||| | ||||||||||||||||||||||    
T  10371579 tatcagttcaatggatccatcatattatatatgcagttaaactctgtgttaaaggtcaaattgaattcttat 10371508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 402
Target Start/End: Original strand, 8573931 - 8574035
Alignment:
Q  301 gaccgatcatatgatatatctatttaaactctgtta-aaaggtcaaattgaattcttatta--tacgacaatgattctctaattattttgaagtctctac 397  Q
    |||| |||||||||||||| |  ||||||||| |   |||||||||||| ||||||||| |  || ||||| ||||||||||||| |||||||| | |||    
T  8573931 gacccatcatatgatatatgtggttaaactctatgctaaaggtcaaattaaattcttatcacataggacaaggattctctaattactttgaagtttatac 8574030  T
Q  398 ctttg 402  Q
    |||||    
T  8574031 ctttg 8574035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 9065936 - 9065977
Alignment:
Q  243 taggaaggagaatcgcacaagcaagaaaaggtacttcttatt 284  Q
    ||||||||||||||| |||| ||||| |||||||||||||||    
T  9065936 taggaaggagaatcgaacaaccaagagaaggtacttcttatt 9065977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 393
Target Start/End: Original strand, 9284606 - 9284703
Alignment:
Q  297 aatggaccgatcatatgatatatctatttaaactctgt-taaaaggtcaaattgaattcttattatacgacaatgattctctaattattttgaagtct 393  Q
    |||||||| ||||||| || ||| || ||||||| | | | |||||||||||||||||||||||||  ||||| || |||| ||||| ||||| ||||    
T  9284606 aatggacccatcatataatttatgtagttaaactttatattaaaggtcaaattgaattcttattatcggacaaggagtctccaattactttgatgtct 9284703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 9295097 - 9295142
Alignment:
Q  337 aaaggtcaaattgaattcttattatacgacaatgattctctaatta 382  Q
    |||||||||||||||||||||||||| ||||  | |||||||||||    
T  9295097 aaaggtcaaattgaattcttattataggacaggggttctctaatta 9295142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 389
Target Start/End: Complemental strand, 9274252 - 9274200
Alignment:
Q  337 aaaggtcaaattgaattcttattatacgacaatgattctctaattattttgaa 389  Q
    ||||||||  |||||||||||||||| ||||| ||||| ||||||| ||||||    
T  9274252 aaaggtcatgttgaattcttattataggacaaggattcactaattactttgaa 9274200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 357
Target Start/End: Complemental strand, 9328328 - 9328260
Alignment:
Q  290 tcaattcaatggaccgatcatatgatatatctatttaaactctgt-taaaaggtcaaattgaattctta 357  Q
    |||||||||||||||  |||||||||||||  | ||||||||| |   |||||||||||||||||||||    
T  9328328 tcaattcaatggacccgtcatatgatatatgaagttaaactctatgctaaaggtcaaattgaattctta 9328260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 41966781 - 41967015
Alignment:
Q  9 tagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatggaagtatg 108  Q
    ||||||||||||||||||||||||||||||||   |||| |||||||| | | |||||||| | ||| || |||||| || ||| ||||||||||| | |    
T  41966781 tagagatagctggtgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaag 41966880  T
Q  109 gttctgttgcaagtagatcctga---gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagcca 205  Q
    ||||||||||||| |  |  |||   ||| ||||||||||||||| | |||||||||||| ||| || |||| |||||||||||||||| ||| ||||||    
T  41966881 gttctgttgcaaggaattaatgatttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatgaagcca 41966980  T
Q  206 tgatttgtgttggaagtcttgtatcaccttccttc 240  Q
    || |||||||||||||||||||| |||||||||||    
T  41966981 tgttttgtgttggaagtcttgtaccaccttccttc 41967015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 402
Target Start/End: Original strand, 41967132 - 41967239
Alignment:
Q  296 caatggaccgatcatatgatatatctatttaaactctgt-taaaaggtcaaattgaattcttattatacgacaatgattctctaattattttgaagtctc 394  Q
    ||||||||| ||||||  ||| || || ||||||||| | | |||||| ||||||||||||||||||| || ||  |||||||||||| || |||| ||     
T  41967132 caatggacccatcatacaatacatgtacttaaactctatgttaaaggttaaattgaattcttattataggataactattctctaattacttcgaaggctt 41967231  T
Q  395 tacctttg 402  Q
    ||||||||    
T  41967232 tacctttg 41967239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 45230351 - 45230244
Alignment:
Q  132 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatca 231  Q
    ||||||||||||||||||| |||||||||||||||||| |  ||||||||||||||||| |||| || |||  |||||||||| || ||| |||||||||    
T  45230351 gaagctgttttggtatgatttcaagagtgaacaagttactcatgttcaaggaattcctactttcaatgaagtaatgatttgtgctgaaagccttgtatca 45230252  T
Q  232 ccttcctt 239  Q
    || |||||    
T  45230251 ccatcctt 45230244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 45243613 - 45243505
Alignment:
Q  132 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtctt-gtatc 230  Q
    |||||||||||||||||||||||| ||||||||| ||| || ||||||||||||||||| |||| || |||  |||||||||| || ||| ||| |||||    
T  45243613 gaagctgttttggtatgatctcaacagtgaacaacttacttatgttcaaggaattcctactttcaatgaagtaatgatttgtgctgaaagccttggtatc 45243514  T
Q  231 accttcctt 239  Q
    |||||||||    
T  45243513 accttcctt 45243505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 45237869 - 45237761
Alignment:
Q  132 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatca 231  Q
    |||| ||||||||||||| ||||||| ||||||||||| || ||||| ||||||||||| |||  || |||  |||||||||| || ||| |||||| ||    
T  45237869 gaagttgttttggtatgacctcaagaatgaacaagttatttatgttcgaggaattcctactttgaatgaagtaatgatttgtgctgaaagccttgtacca 45237770  T
Q  232 ccttccttc 240  Q
    |||||||||    
T  45237769 ccttccttc 45237761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 45238024 - 45237908
Alignment:
Q  1 tatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatg 100  Q
    ||||||| ||||||||| |||||||||||||||||||| |  |||||||||||||  || | | |||||   ||||||| ||||  |||||| ||||||     
T  45238024 tatggatctagagatagttggtgtaaactttttactttagttgaatcgtgtttcaattttcatctgaaattgttgaggcctttatgttattcaagcgatc 45237925  T
Q  101 gaagtatggttctgttg 117  Q
    ||||||  |||||||||    
T  45237924 gaagtaaagttctgttg 45237908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 45243765 - 45243657
Alignment:
Q  9 tagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatggaagtatg 108  Q
    ||||||||  ||||||||||||||||||||||   ||||||||||||  || | |||| || ||||||||| ||||  ||||||||| ||| ||||||      
T  45243765 tagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattcgagtgatcgaagtaaa 45243666  T
Q  109 gttctgttg 117  Q
    |||||||||    
T  45243665 gttctgttg 45243657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 294 - 402
Target Start/End: Complemental strand, 37462205 - 37462095
Alignment:
Q  294 ttcaatggaccgatcatatgatatatctatttaaactctgt--taaaaggtcaaattgaattcttattatacgacaatgattctctaattattttgaagt 391  Q
    |||| |||||| |||||||||||||| || ||||  ||| |  |||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||    
T  37462205 ttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaattcttgttataggacaaggattctctaattactttgaagt 37462106  T
Q  392 ctctacctttg 402  Q
    |||||||||||    
T  37462105 ctctacctttg 37462095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 37462563 - 37462447
Alignment:
Q  1 tatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatg 100  Q
    ||||||| ||||||||| ||||||||||||| |||| |||   ||||||||||||| | |||||||||| ||||||||| ||||  |||||| || ||||    
T  37462563 tatggatctagagatagttggtgtaaactttgtactgtggataaatcgtgtttcacttcacctttgaaatctttgaggcctttatgttattctagtgatg 37462464  T
Q  101 gaagtatggttctgttg 117  Q
    |||||| |||| |||||    
T  37462463 gaagtaaggttttgttg 37462447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 37462410 - 37462306
Alignment:
Q  133 aagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaa---gccatgatttgtgttggaagtcttgtat 229  Q
    ||||||||||||||||||   ||||||||||||||||||| | || ||||| ||||||||||  ||  |   || ||||||||||||| |||||||||||    
T  37462410 aagctgttttggtatgattggaagagtgaacaagttagttatattgaaggagttcctaatttgaatggagctgctatgatttgtgttgaaagtcttgtat 37462311  T
Q  230 cacct 234  Q
    |||||    
T  37462310 cacct 37462306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 402
Target Start/End: Complemental strand, 4179 - 4070
Alignment:
Q  294 ttcaatggaccgatcatatgatatatctatttaaactctgt--taaaaggtcaaattgaattcttattatacgacaatgattctctaattattttgaagt 391  Q
    ||||||||||| |||||||||| ||| || |||||||||||  |||||  ||||||||||||||||||||| || || |||||| |||||| |||||| |    
T  4179 ttcaatggacccatcatatgatttatttagttaaactctgtgctaaaac-tcaaattgaattcttattataggaaaaggattctataattactttgaatt 4081  T
Q  392 ctctacctttg 402  Q
    |||||||||||    
T  4080 ctctacctttg 4070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 131 - 239
Target Start/End: Complemental strand, 4394 - 4289
Alignment:
Q  131 agaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatc 230  Q
    |||||||||||||||||||| | |||| |||||||||||||| ||   ||| ||||||| ||||| ||  ||| | |||||||||||||||||||||| |    
T  4394 agaagctgttttggtatgatttgaagactgaacaagttagttatg---aagaaattcctgatttcaatggagctaagatttgtgttggaagtcttgtacc 4298  T
Q  231 accttcctt 239  Q
    |||||||||    
T  4297 accttcctt 4289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 26574935 - 26574700
Alignment:
Q  1 tatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttc---accttacctttgaaagctttgaggcttttagcttattcgagcg 97  Q
    ||||||||||||||||| |||||||||||||||||| |||   |||||||||||      |||||| || || ||||||||||||||| |||||| |  |    
T  26574935 tatggatgtagagatagttggtgtaaactttttactgtggttaaatcgtgtttcgatgatttacctgtggaatctttgaggcttttaggttattccattg 26574836  T
Q  98 atggaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcga 197  Q
    ||||||  | |||| |||||   ||||||  || ||| ||||||||||||||| |  ||||| | |||||||||  | |||||| |  || | |||| ||    
T  26574835 atggaaaaaaggttttgttgagggtagatgttgtgaatctgttttggtatgatttggagagtaatcaagttagtcattttcaagaagatcttgatttgga 26574736  T
Q  198 tcaagccatgatttgtgttggaagtcttgtatcacc 233  Q
    | | || |||||||||||||||||||||||| ||||    
T  26574735 tgacgctatgatttgtgttggaagtcttgtaccacc 26574700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 561121 - 561019
Alignment:
Q  137 tgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatcaccttc 236  Q
    ||||||||||||||||||| ||| ||  || ||  ||||||| ||||||||||||| || || |||  ||||||| ||||||||| ||| || |||||||    
T  561121 tgttttggtatgatctcaaaagtaaaagagctacctgtgttccaggaattcctaatatcaataaagttatgatttatgttggaagccttctaccaccttc 561022  T
Q  237 ctt 239  Q
    |||    
T  561021 ctt 561019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 398
Target Start/End: Complemental strand, 26574584 - 26574525
Alignment:
Q  339 aggtcaaattgaattcttattatacgacaatgattctctaattattttgaagtctctacc 398  Q
    |||||||||||||||||||| ||| || || ||||||||||||| ||||| |||| ||||    
T  26574584 aggtcaaattgaattcttatcataggataaggattctctaattactttgacgtctttacc 26574525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University