View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17994_low_2 (Length: 365)
Name: NF17994_low_2
Description: NF17994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17994_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 354
Target Start/End: Original strand, 2343474 - 2343811
Alignment:
| Q |
17 |
agagataaaagagagtatgagagatttaccttgttgaaagtgttgaggtggaaaagaagggaaggtgttgagagaagttgaagggagttgatcatgatct |
116 |
Q |
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| T |
2343474 |
agagataaaagagagtatgagagatttaccttgttgaaagtgttgaggtggaaaagaagggaaggtgttgagagaagttgaagggagttgatcatgatct |
2343573 |
T |
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| Q |
117 |
tcatgagggttaaacatgaaactatgaggtggtgggaatgccatattgaatgctagtgatatgatacattcatgcaaatatgtgacttgtttttgttttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2343574 |
tcatgagggttaaacatgaaactatgaggtggtgggaatgccatattgaatgctagtgatatgatacattcatgcaaatatgtgacttgtttttgttttt |
2343673 |
T |
|
| Q |
217 |
cttgtgtctctctctagatctctagttaaatttatgtagctatactatattcatctgtcacatgatataatatatgttcagaggggtttggcactcactt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2343674 |
cttgtgtctctctctagatctctagttaaatttatgtagctatactatattcatctgtcacatgatataatatatgttcagaggggtttggcactcactt |
2343773 |
T |
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| Q |
317 |
tcatggtgacaaaagtattggaaagggagatgatgatg |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
2343774 |
tcatggtgacaaaagtattggaaagggagatgatgatg |
2343811 |
T |
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