View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17994_low_3 (Length: 353)
Name: NF17994_low_3
Description: NF17994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17994_low_3 |
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| [»] scaffold0635 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: scaffold0635 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 79 - 353
Target Start/End: Complemental strand, 3091 - 2808
Alignment:
| Q |
79 |
aaaatacatctttcctctcttgttttctttgagtttttcaactggctttaacttctcctaagctgacaatttcagtttgtccaacttttttcctcaaaca |
178 |
Q |
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| T |
3091 |
aaaatacatcttgc-tctcttgttttctttgagtttttcaactggctttaacttctcctaagctgacaatttcagtttgtccaacttttttcctcaaaca |
2993 |
T |
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| Q |
179 |
ttttgtcaacgtgacagcatctacaccatctccaataactactatcttgtctttctcatctccctctaatcccacaaaattcacacctgcatttaccaaa |
278 |
Q |
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| T |
2992 |
ttttgtcaacgtgacagcatctacaccatctccaataactactatcttgtctttctcatctccctctaatcccacaaaattcacacctgcatttaccaaa |
2893 |
T |
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| Q |
279 |
tcacaaaactttagtaac---ataactca-------accagttagaaaatgttaattagccaagaaaatttagagagaaaaatat |
353 |
Q |
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| T |
2892 |
ccacaaaactttagtaacataataactcagatcaacactagttagaaaatgttaattagcgaagaaaatttagagagaaaaatat |
2808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 79 - 353
Target Start/End: Original strand, 10105693 - 10105976
Alignment:
| Q |
79 |
aaaatacatctttcctctcttgttttctttgagtttttcaactggctttaacttctcctaagctgacaatttcagtttgtccaacttttttcctcaaaca |
178 |
Q |
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| T |
10105693 |
aaaatacatcttgc-tctcttgttttctttgagtttttcaactggctttaacttctcctaagctgacaatttcagtttgtccaacttttttcctcaaaca |
10105791 |
T |
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| Q |
179 |
ttttgtcaacgtgacagcatctacaccatctccaataactactatcttgtctttctcatctccctctaatcccacaaaattcacacctgcatttaccaaa |
278 |
Q |
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| T |
10105792 |
ttttgtcaacgtgacagcatctacaccatctccaataactactatcttgtctttctcatctccctctaatcccacaaaattcacacctgcatttaccaaa |
10105891 |
T |
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| Q |
279 |
tcacaaaactttagtaac---ataactca-------accagttagaaaatgttaattagccaagaaaatttagagagaaaaatat |
353 |
Q |
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| T |
10105892 |
ccacaaaactttagtaacataataactcagatcaacactagttagaaaatgttaattagcgaagaaaatttagagagaaaaatat |
10105976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 10043944 - 10044018
Alignment:
| Q |
13 |
tatatattcctaaagctaaacaattaatttgacaaa----tacatcaaaaagaagaagaagaaaaattggaaaataca |
86 |
Q |
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| T |
10043944 |
tatatattcctaaagctaaacattaaatttgacatacaactaaatcaaa---aagaagaagaaaaattggaaaataca |
10044018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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