View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17995_high_5 (Length: 517)
Name: NF17995_high_5
Description: NF17995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17995_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 44842181 - 44841915
Alignment:
| Q |
18 |
agattgacactagtatataatctcctcttccaaaagtaaagaaagttaaaatcagttattcatttaaaggttagaaatccgaaggagtttttgggtttat |
117 |
Q |
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| T |
44842181 |
agattgacactagtatataatctcctcttccaaaagtaaagaaagttaaaatcagttattcatttaaaggttagaaatccgaaggagtttttgggtttat |
44842082 |
T |
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| Q |
118 |
tagactttagataatggacatctcagtgttagagtttgagtttcacacatgggccaacaatttcctaatggctgataaagtaataaatnnnnnnnnnnnn |
217 |
Q |
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| T |
44842081 |
tagactttagataatggacatctcagtgttagagtttgagtttcacacatgggccaacaatttcctaatggctgataaagtaataaataaaaactaaaaa |
44841982 |
T |
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| Q |
218 |
nnnnnnnnnnnntgcaattgattgcatgcatcacagtagttatttgatgaatcaagagatggttgag |
284 |
Q |
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| T |
44841981 |
aagaaaaagaaatgcaattgattgcatgcatcacagtagttatttgatgaatcaagagatggttgag |
44841915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 348 - 507
Target Start/End: Complemental strand, 44841849 - 44841668
Alignment:
| Q |
348 |
ggaaatagtttcatcatcaaagtagtaattgtcatgattccttggaaatgtttgttgacattaacttgagagatgaatatg------------------- |
428 |
Q |
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| T |
44841849 |
ggaaatagtttcatcatcaaagtagtaattgtcatgattccttggaaatgtttgttgacattaacttgagagatgaatatgatttcctgcgtgtgtacct |
44841750 |
T |
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| Q |
429 |
---aatgtcattatgttgtactttgctcttcttttcctatttgcgatgattgtcaatgtttcttacctcatgtatatctgtg |
507 |
Q |
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| T |
44841749 |
gtcaatgtcattatgttgtactttgctcttcttttcctatttgcgatgattgtcaatgtttcttacctcatgtatatctgtg |
44841668 |
T |
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