View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17995_low_1 (Length: 630)
Name: NF17995_low_1
Description: NF17995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17995_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 21 - 397
Target Start/End: Complemental strand, 44842291 - 44841915
Alignment:
| Q |
21 |
cttatcgttggtggcgacatcgcagaagttgcaagggatgaagtattggctttgagaggaaaaaacagttatactcgttttctttgattttgaaaaaaga |
120 |
Q |
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| T |
44842291 |
cttatcgttggtggcgacatcacagaagttgcaagggatgaactattggctttgagaggaaaaaacagttatactcgttttctttgattttgaaaaaaga |
44842192 |
T |
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| Q |
121 |
gggagaaaggagattgacactagtatataatctcctcttccaaaagtaaagaaagttaaaatcagttattcatttaaaggttagaaatccgaaggagttt |
220 |
Q |
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| T |
44842191 |
gggagaaaggagattgacactagtatataatctcctcttccaaaagtaaagaaagttaaaatcagttattcatttaaaggttagaaatccgaaggagttt |
44842092 |
T |
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| Q |
221 |
ttgggtttattagactttagataatggacatctcagtgttagagtttgagtttcacacatgggccaacaatttcctaatggctgataaagtaataaatnn |
320 |
Q |
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| T |
44842091 |
ttgggtttattagactttagataatggacatctcagtgttagagtttgagtttcacacatgggccaacaatttcctaatggctgataaagtaataaataa |
44841992 |
T |
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| Q |
321 |
nnnnnnnnnnnnnnnnnnnnnntgcaattgattgcatgcatcacagtagttatttgatgaatcaagagatggttgag |
397 |
Q |
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| T |
44841991 |
aaactaaaaaaagaaaaagaaatgcaattgattgcatgcatcacagtagttatttgatgaatcaagagatggttgag |
44841915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 461 - 620
Target Start/End: Complemental strand, 44841849 - 44841668
Alignment:
| Q |
461 |
ggaaatagtttcatcatcaaagtagtaattgtcatgattccttggaaatgtttgttgacattaacttgagagatgaatatg------------------- |
541 |
Q |
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| T |
44841849 |
ggaaatagtttcatcatcaaagtagtaattgtcatgattccttggaaatgtttgttgacattaacttgagagatgaatatgatttcctgcgtgtgtacct |
44841750 |
T |
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| Q |
542 |
---aatgtcattatgttgtactttgctcttcttttcctatttgcgatgattgtcaatgtttcttacctcatgtatatctgtg |
620 |
Q |
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| T |
44841749 |
gtcaatgtcattatgttgtactttgctcttcttttcctatttgcgatgattgtcaatgtttcttacctcatgtatatctgtg |
44841668 |
T |
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