View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17995_low_11 (Length: 317)
Name: NF17995_low_11
Description: NF17995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17995_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 107 - 284
Target Start/End: Complemental strand, 10168842 - 10168668
Alignment:
| Q |
107 |
gaggaactgtttggagacaagggatagtgaattcaagatagaccttgagtgagaatataaattgtttttgtcgtcgttgaggatgaatctgaatatcaat |
206 |
Q |
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| T |
10168842 |
gaggaactgtttggagacaagggatagagaattcaagatatataatgagtaataatctaaattgtttt---cgtctttgaggatgaatctgaagatcaat |
10168746 |
T |
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| Q |
207 |
tcccaacattcatcaggtaaatctgaagaaacaatttgttgtgatgatttcgtagaagaacttctcttccttttcatt |
284 |
Q |
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| T |
10168745 |
tcccaacattcattaggtaaatctgaagaaaccgcttgttgtgatgatttcgtagaagaacttctcttccttttcatt |
10168668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 107 - 284
Target Start/End: Complemental strand, 10176367 - 10176193
Alignment:
| Q |
107 |
gaggaactgtttggagacaagggatagtgaattcaagatagaccttgagtgagaatataaattgtttttgtcgtcgttgaggatgaatctgaatatcaat |
206 |
Q |
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| T |
10176367 |
gaggaactgtttggagacaagggatagagaattcaagatatataatgagtaataatctaaattgtttt---cgtctttgaggatgaatctgaagatcaat |
10176271 |
T |
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| Q |
207 |
tcccaacattcatcaggtaaatctgaagaaacaatttgttgtgatgatttcgtagaagaacttctcttccttttcatt |
284 |
Q |
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| T |
10176270 |
tcccaacattcattaggtaaatctgaagaaaccgcttgttgtgatgatttcgtagaagaacttctcttccttttcatt |
10176193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 185 - 290
Target Start/End: Complemental strand, 10167280 - 10167175
Alignment:
| Q |
185 |
gaggatgaatctgaatatcaattcccaacattcatcaggtaaatctgaagaaacaatttgttgtgatgatttcgtagaagaacttctcttccttttcatt |
284 |
Q |
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| T |
10167280 |
gaggatgaatctgaatatcaattcccaacattcgtcaggtaaatctgaagaaacaatttgttgtcatgatttcgtagaagaacttctcttccttttcatt |
10167181 |
T |
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| Q |
285 |
ttcatt |
290 |
Q |
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|||||| |
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| T |
10167180 |
ttcatt |
10167175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 10167351 - 10167280
Alignment:
| Q |
65 |
tgggacggatgtctgttaaaaagtagatagagagtgataatc---gaggaactgtttggagacaagggatag |
133 |
Q |
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| T |
10167351 |
tgggacggatgtctgttaaaaagtagatagagagtgataatcgaagaggaactgtttggagacaagggatag |
10167280 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 19467220 - 19467179
Alignment:
| Q |
107 |
gaggaactgtttggagacaagggatagtgaattcaagataga |
148 |
Q |
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|||||| ||||||||||||||||| || |||||||||||||| |
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| T |
19467220 |
gaggaattgtttggagacaagggaaagagaattcaagataga |
19467179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 32152235 - 32152271
Alignment:
| Q |
107 |
gaggaactgtttggagacaagggatagtgaattcaag |
143 |
Q |
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| T |
32152235 |
gaggaactgtttggagacgagggagagtgaattcaag |
32152271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 19633373 - 19633409
Alignment:
| Q |
107 |
gaggaactgtttggagacaagggatagtgaattcaag |
143 |
Q |
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| T |
19633373 |
gaggaactgtttggagacgagggatagagaattcaag |
19633409 |
T |
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