View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17995_low_14 (Length: 299)
Name: NF17995_low_14
Description: NF17995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17995_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 283
Target Start/End: Original strand, 41571312 - 41571589
Alignment:
| Q |
6 |
ggagaagcaaaggggtgctgttttggatttgattaagaaggcaaatccgaatatatttgttcaaagcattgttaatggttgttatgatgcaccnnnnnnn |
105 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41571312 |
ggagaatccaaggggtgctgttttggatttgattaagaaggcaaatccgaatatatttgttcaaagcattgttaatggttgttatgatgcaccttttttt |
41571411 |
T |
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| Q |
106 |
gtgacaaggtttaaagaagctgtttttcattactcatcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcctaataggttgatgtttg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41571412 |
gtgacaaggtttaaagaagctgtttttcattactcatcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcctaataggttgatgtttg |
41571511 |
T |
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| Q |
206 |
aggaagagttttgggggaaggatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacat |
283 |
Q |
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| T |
41571512 |
aggaagagttttgggggaaggatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacat |
41571589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 41590270 - 41590537
Alignment:
| Q |
16 |
aggggtgctgttttggatttgattaagaaggcaaatccgaatatatttgttcaaagcattgttaatggttgttatgatgcaccnnnnnnngtgacaaggt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |||||||||| |
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| T |
41590270 |
aggggtgctgttttggatttgattaagaaggcaaatccgaatatatttattcatagcattgttaatggtggttatgatgcacctttttttgtgacaaggt |
41590369 |
T |
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| Q |
116 |
ttaaagaagctgtttttcattactcatcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcctaataggttgatgtttgaggaagagtt |
215 |
Q |
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|||| |||||||||||| |||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || || |
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| T |
41590370 |
ttaaggaagctgttttttattattcagcattgtttgatatgcttgattacaacaatgttgaacgtgaggatccttttaggttgatgtttgaggtagtttt |
41590469 |
T |
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| Q |
216 |
ttgggggaaggatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacat |
283 |
Q |
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| T |
41590470 |
ttgggggaatgatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacat |
41590537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 41583741 - 41584006
Alignment:
| Q |
18 |
gggtgctgttttggatttgattaagaaggcaaatccgaatatatttgttcaaagcattgttaatggttgttatgatgcaccnnnnnnngtgacaaggttt |
117 |
Q |
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| T |
41583741 |
gggtgatgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaatggtggttacgatgaacctttttttgtgacaaggttt |
41583840 |
T |
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| Q |
118 |
aaagaagctgtttttcattactcatcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcctaataggttgatgtttgaggaagagtttt |
217 |
Q |
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| T |
41583841 |
aaggaagctgtttttcattattcagcattgtttgatacgcttgatcacaacaatgttgaacgtgaggatcctattaggttgatgtttgaggaagtgtttt |
41583940 |
T |
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| Q |
218 |
gggggaaggatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacat |
283 |
Q |
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| T |
41583941 |
gggggaaggatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacat |
41584006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 41557612 - 41557877
Alignment:
| Q |
18 |
gggtgctgttttggatttgattaagaaggcaaatccgaatatatttgttcaaagcattgttaatggttgttatgatgcaccnnnnnnngtgacaaggttt |
117 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||||||| |||| |||| ||| |||||||||||| |
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| T |
41557612 |
gggtgctgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaatggtggttacgatgaacctttttttgtgacaaggttt |
41557711 |
T |
|
| Q |
118 |
aaagaagctgtttttcattactcatcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcctaataggttgatgtttgaggaagagtttt |
217 |
Q |
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|| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| |
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| T |
41557712 |
aaggaagctgtttttcattattcagcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcctgttaggttgatgtttgagggagacgttt |
41557811 |
T |
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| Q |
218 |
gggggaaggatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacat |
283 |
Q |
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| T |
41557812 |
gggggaaagatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacat |
41557877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 41598570 - 41598621
Alignment:
| Q |
232 |
atgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacat |
283 |
Q |
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||||||||| |||| |||||||||| ||| |||||||||||||| ||||||| |
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| T |
41598570 |
atgaatgttgtagcatgtgaaggttttgagagggttgagaggcccgagacat |
41598621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 193 - 283
Target Start/End: Complemental strand, 23916192 - 23916102
Alignment:
| Q |
193 |
aggttgatgtttgaggaagagttttgggggaaggatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacat |
283 |
Q |
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||||||||||||||| ||||||| ||||||| ||| |||||||| ||||||| |||||||||| | | |||||||||||||||||||||| |
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| T |
23916192 |
aggttgatgtttgagaaagagttctgggggagggaagtaatgaatattatagcctgtgaaggttctcagagggttgagaggccagagacat |
23916102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 22546323 - 22546373
Alignment:
| Q |
233 |
tgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacat |
283 |
Q |
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||||||||||||| |||||||||||||| || || |||||||||||||||| |
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| T |
22546323 |
tgaatgttatagcctgtgaaggttgtgagagagtagagaggccagagacat |
22546373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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