View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17995_low_2 (Length: 614)
Name: NF17995_low_2
Description: NF17995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17995_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 16 - 510
Target Start/End: Complemental strand, 43267985 - 43267481
Alignment:
| Q |
16 |
caccatcagcttgttcaattgcattacacactttatcttgtgcttctcttatcatcttctcgaatcgagctcgaacggaagatgcggtggctccatcgtt |
115 |
Q |
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| T |
43267985 |
caccatcagcttgttcaattgcattacacactttatcttgtgcttctcttatcatcttctcgaatcgagctcgaacggaagatgcggtggctccgtcgtt |
43267886 |
T |
|
| Q |
116 |
gtcgacgccgcggagaaatgtatcggggcgttctgattctggtgtttctttttctattgaaacggttgcttttgttataagtcgttgaaagtggtgagaa |
215 |
Q |
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| T |
43267885 |
gtcgacgccgcgaagaaatgtatcggggcgttctgattctggtgtttctttttcaattgaaacggttgcttttgttataagtcgttgaaagtggtgagaa |
43267786 |
T |
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| Q |
216 |
gatgtggttttacgcgtttgtgtagtgagtgattttgggggtgtatgagaaatatgagagatttgagttgattttgaagatgtgaatgtgaagaagggag |
315 |
Q |
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| T |
43267785 |
gatgtggttttacgggtttgtgtagtgagtgattttgggggtgtatgagaaatatgagagatttgagttgattttgaagatgtgaatgtgaagaagggag |
43267686 |
T |
|
| Q |
316 |
tgatggagtaagaaggagctgatatagaaattgtacacggcattgtaacgagaaatggtgttcgtttacactgtcactgtc------acagagaaatgaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43267685 |
tgatggagtaagaaggagctgatatagaaattgtacacggcattgtaaagagaaatggtgttcgtttacactgtcactgtcactgtaacagagaaatgaa |
43267586 |
T |
|
| Q |
410 |
gaaaggaagaagagaa-aga-----ggggtttcaaaatgaagattgcga---gttacagtgacgataacatattataactcgacgataaggtgttcctga |
500 |
Q |
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| T |
43267585 |
gaaaggaagaagagaagagaaagagggggtttgaaaatgaagattgcgagttgttacagtgacgataac-----ataactcgacgataaggtgttcctga |
43267491 |
T |
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| Q |
501 |
tatacttttc |
510 |
Q |
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| T |
43267490 |
tatacttttc |
43267481 |
T |
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