View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17995_low_3 (Length: 580)

Name: NF17995_low_3
Description: NF17995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17995_low_3
NF17995_low_3
[»] chr1 (9 HSPs)
chr1 (18-569)||(15755352-15755903)
chr1 (18-569)||(15766221-15766772)
chr1 (18-569)||(15779336-15779908)
chr1 (385-509)||(15737625-15737749)
chr1 (384-503)||(15730021-15730140)
chr1 (383-512)||(33411586-33411715)
chr1 (69-187)||(33411932-33412050)
chr1 (236-375)||(15737455-15737594)
chr1 (66-110)||(15729682-15729726)
[»] chr7 (6 HSPs)
chr7 (463-516)||(39256586-39256639)
chr7 (466-518)||(39193595-39193647)
chr7 (466-518)||(39222948-39223000)
chr7 (463-513)||(39238620-39238670)
chr7 (472-513)||(39176879-39176920)
chr7 (466-519)||(39259835-39259888)


Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 18 - 569
Target Start/End: Original strand, 15755352 - 15755903
Alignment:
Q  18 aacacaagtagaggaaaccaaacaaatccttagcttaatccctatttgggctgctacatttattccaagtgcaatgattgctcaaataaatacccttttc 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15755352 aacacaagtagaggaaaccaaacaaatccttagcttaatacctatttgggttgccacatttattccaagtgcaatgattgctcaaataaatacccttttc 15755451  T
Q  118 ataaaacaaggaactactcttaacagatccattggcaacttaaaagttcctccagcaagtttaactgcatgtacagttttgaccatgattatcacttaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15755452 ataaaacaaggaactactcttaacagatccattggcaacttaaaagttcctccagcaagtttaactgcatgtacagttttgaccatgattatcacttaca 15755551  T
Q  218 taatctatgaaagaatcattgtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatagggttcataatcca 317  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15755552 taatctatgaaagactcattgtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatagggttcataatcca 15755651  T
Q  318 tatagtgataatgacagttgcatccatgattgaaagacatagacttagtgtggccaaaaaccatgaagttccattgagcatattcattttgctaccacaa 417  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  15755652 catagtgataatgacagttgcatccatgattgaaagacatagacttagtgtggccaaaaaacatgaagttccattaagcatattcattttgctaccacaa 15755751  T
Q  418 tttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15755752 tttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcat 15755851  T
Q  518 actcattaactactactggaattggtagttttctcagcacctttcttctctc 569  Q
    | || ||||||||||||||||||||||||||||||||||| |||||||||||    
T  15755852 attccttaactactactggaattggtagttttctcagcacttttcttctctc 15755903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 569
Target Start/End: Original strand, 15766221 - 15766772
Alignment:
Q  18 aacacaagtagaggaaaccaaacaaatccttagcttaatccctatttgggctgctacatttattccaagtgcaatgattgctcaaataaatacccttttc 117  Q
    ||||||||| || |||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||     
T  15766221 aacacaagtggaagaaaccaaacaaatccttagcttagtccctatttgggttgcaacatttattccaagtgcaatgatagctcaaataaatacccttttt 15766320  T
Q  118 ataaaacaaggaactactcttaacagatccattggcaacttaaaagttcctccagcaagtttaactgcatgtacagttttgaccatgattatcacttaca 217  Q
     ||||||||||||||||||||||||||||||||||||||||  |  |||| ||| |||||||| |||||| |||| ||||||||||||||||||||||||    
T  15766321 gtaaaacaaggaactactcttaacagatccattggcaacttccatattccaccatcaagtttagctgcatttacaattttgaccatgattatcacttaca 15766420  T
Q  218 taatctatgaaagaatcattgtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatagggttcataatcca 317  Q
    || ||||||||||  |||||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||    
T  15766421 tactctatgaaagtttcattgtcaagattatgcaaaagttgactaagaatcctagagggattacactccttcaaagaatgagcatagggttcataatcca 15766520  T
Q  318 tatagtgataatgacagttgcatccatgattgaaagacatagacttagtgtggccaaaaaccatgaagttccattgagcatattcattttgctaccacaa 417  Q
     ||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||    
T  15766521 catagtgataatgatagttgcattcatgattgaaagacaaagacttagtgtggtcaaaaaacatgaagttccattaagcatattcattttgcttccacaa 15766620  T
Q  418 tttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcat 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15766621 tttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagccttggaacatcat 15766720  T
Q  518 actcattaactactactggaattggtagttttctcagcacctttcttctctc 569  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15766721 actcattaactactactggaattggtagttttctcagcacttttcttctctc 15766772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 569
Target Start/End: Original strand, 15779336 - 15779908
Alignment:
Q  18 aacacaagtagaggaaaccaaacaaatccttagcttaatccctatttgggctgctacatttattccaagtgcaatgattgctcaaataaatacccttttc 117  Q
    ||||||||||||||| |||||||||||||| ||  ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||| | ||     
T  15779336 aacacaagtagaggagaccaaacaaatcctaagtgtaatccctatttgggttgctacatttattcctagtgcaatgattgctcagataaataccttgttt 15779435  T
Q  118 ataaaacaaggaactactcttaacagatccattggcaacttaaaagttcctccagcaagtttaactgcatgtacagttttgaccatgattatcacttaca 217  Q
     |||| |||||| |||| ||  ||||| |||||||||||||  |  |||||||| ||||||||| ||||  |||| | || |||||||||||||| || |    
T  15779436 gtaaagcaaggatctacactcgacagagccattggcaacttcgatattcctccatcaagtttaattgcagttacaatcttaaccatgattatcacgtata 15779535  T
Q  218 taatctatgaaagaatcattgtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatagggttcataatcca 317  Q
    |||||||||||    || |||||||||||||||| | |||||| ||||| |||||||| ||| | ||||||||||||||||||||||| |||||||||||    
T  15779536 taatctatgaacatttctttgtcaagattatgcagaggttgactaagaaccctagagggattactcttcttcaaagaatgagcataggattcataatcca 15779635  T
Q  318 tatagtgataatgacagttgcatccatgattgaaagacatagacttagtgtggccaaaaaccatg---------------------aagttccattgagc 396  Q
    |||||||||||||| ||||||||   ||  |||||||||||||||   |||||||||| | ||||                     | ||||||||||||    
T  15779636 tatagtgataatgatagttgcatatttggctgaaagacatagactatttgtggccaaagaacatggagtaattgaaaatggaggacaggttccattgagc 15779735  T
Q  397 atattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagca 496  Q
    ||||||||||||   ||||||||| ||||||||||| | || ||||| || ||||||||||| ||||| |||||||||||||| ||||| ||||||||||    
T  15779736 atattcattttggctccacaatttgtacttatgggaatagcagaagccctcttagagggtgccaaaattgagtttttctatgaccaagccccagaaagca 15779835  T
Q  497 tgaagagtcttggaacatcatactcattaactactactggaattggtagttttctcagcacctttcttctctc 569  Q
    ||||||| ||||| |  || || || ||||||||||| || ||||||||||| || ||||| |||||||||||    
T  15779836 tgaagagccttgggagttcgtattccttaactactacgggcattggtagtttccttagcacttttcttctctc 15779908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 385 - 509
Target Start/End: Original strand, 15737625 - 15737749
Alignment:
Q  385 gttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaag 484  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||   ||||||||| |  |||||| ||| ||||| ||||| |||||||||||||    
T  15737625 gttccattgagcatattcattttgcttccacaatttatacttatgggaacagctgaagcattcatagaggttgctaaaattgagttcttctatgatcaag 15737724  T
Q  485 caccagaaagcatgaagagtcttgg 509  Q
    | |||||||||||||||||||||||    
T  15737725 ctccagaaagcatgaagagtcttgg 15737749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 384 - 503
Target Start/End: Original strand, 15730021 - 15730140
Alignment:
Q  384 agttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaa 483  Q
    |||||||||||||||||||||||| || || |||||| |||||||||||   ||||| ||| ||||||||| ||| ||||| ||||| ||||||||||||    
T  15730021 agttccattgagcatattcattttactccctcaatttttacttatgggaacagctgatgcatttttagaggttgctaaaattgagttcttctatgatcaa 15730120  T
Q  484 gcaccagaaagcatgaagag 503  Q
    || |||||||||||||||||    
T  15730121 gctccagaaagcatgaagag 15730140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 383 - 512
Target Start/End: Complemental strand, 33411715 - 33411586
Alignment:
Q  383 aagttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatca 482  Q
    ||||||| ||||| || ||||||||||| || || |||||||||||||||   ||||| ||| || |||||| ||| ||||| |||||||||||||||||    
T  33411715 aagttcctttgagtattttcattttgcttcctcagtttatacttatgggaacagctgatgcatttctagaggttgcgaaaatcgagtttttctatgatca 33411616  T
Q  483 agcaccagaaagcatgaagagtcttggaac 512  Q
    ||| |||||||||||||||||| |||||||    
T  33411615 agctccagaaagcatgaagagtattggaac 33411586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 187
Target Start/End: Complemental strand, 33412050 - 33411932
Alignment:
Q  69 tgctacatttattccaagtgcaatgattgctcaaataaatacccttttcataaaacaaggaactactcttaacagatccattggcaacttaaaagttcct 168  Q
    |||||||||| |||||||| ||||||| |||||| |||| ||||||||  ||||||||||||| || ||| |||||  |||||| | ||| ||| ||||     
T  33412050 tgctacatttgttccaagtacaatgatggctcaagtaaacaccctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattcca 33411951  T
Q  169 ccagcaagtttaactgcat 187  Q
    |||||||||||| ||||||    
T  33411950 ccagcaagtttagctgcat 33411932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 375
Target Start/End: Original strand, 15737455 - 15737594
Alignment:
Q  236 ttgtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatagggttcataatccatatagtgataatgacagt 335  Q
    ||||||||||||||||||| | ||| || || |||||||| ||| | || |||||||| ||| |||||||  | ||||| |||||| |||| |||  |||    
T  15737455 ttgtcaagattatgcaaaaatggactaaaaaccctagaggaattactctacttcaaaggatgggcataggcatgataattcatataatgattatggtagt 15737554  T
Q  336 tgcatccatgattgaaagacatagacttagtgtggccaaa 375  Q
    |||| |  | | ||||||| |||| |||||||| ||||||    
T  15737555 tgcaactttcactgaaagatataggcttagtgtagccaaa 15737594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 15729682 - 15729726
Alignment:
Q  66 ggctgctacatttattccaagtgcaatgattgctcaaataaatac 110  Q
    |||| ||||||| ||||| ||| ||||||||||||||||||||||    
T  15729682 ggctactacattaattcctagtacaatgattgctcaaataaatac 15729726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 463 - 516
Target Start/End: Complemental strand, 39256639 - 39256586
Alignment:
Q  463 atggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatca 516  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||||||| |||||    
T  39256639 atggagtttttttatgatcaagcaccagaaggcatgaaaagtcttggagcatca 39256586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 466 - 518
Target Start/End: Complemental strand, 39193647 - 39193595
Alignment:
Q  466 gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcata 518  Q
    ||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  39193647 gagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcata 39193595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 466 - 518
Target Start/End: Complemental strand, 39223000 - 39222948
Alignment:
Q  466 gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcata 518  Q
    ||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  39223000 gagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcata 39222948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 513
Target Start/End: Complemental strand, 39238670 - 39238620
Alignment:
Q  463 atggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaaca 513  Q
    |||||||| ||||| |||||||| ||||||| |||||||||||| ||||||    
T  39238670 atggagttcttctacgatcaagcgccagaaaccatgaagagtctcggaaca 39238620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 513
Target Start/End: Complemental strand, 39176920 - 39176879
Alignment:
Q  472 ttctatgatcaagcaccagaaagcatgaagagtcttggaaca 513  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||    
T  39176920 ttctatgatcaagcaccagaaggcatgaaaagtctcggaaca 39176879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 519
Target Start/End: Complemental strand, 39259888 - 39259835
Alignment:
Q  466 gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcatac 519  Q
    |||||||| || |||||||| ||||||  |||||| ||||||||||||||||||    
T  39259888 gagtttttttacgatcaagcgccagaatccatgaaaagtcttggaacatcatac 39259835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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