View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17995_low_4 (Length: 544)
Name: NF17995_low_4
Description: NF17995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17995_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 15 - 492
Target Start/End: Complemental strand, 38170050 - 38169572
Alignment:
| Q |
15 |
cacagaagcttgatatattagcatcagatttttcacagcaaccgtgcattgggacgcggtgttggattggtaaatgtttatccaaacacaagcttagtta |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38170050 |
cacagaagcttgatatattagcatcagatttttcacagcaaccgtgcattgggacgcggggttggattggtaaatgtttatccaaacacaagcttagtta |
38169951 |
T |
|
| Q |
115 |
gttcaagactagtataattttttcatagctttcatgtgattacaaagaagccatgttaataaaacacagaagaaacatatcgagttaatcacttaaaatt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38169950 |
attcaagactagtataattttttcatagctttcatgtgattacaaagaagccatgttaataaaacacagaagaaacatatcgagttaatcacttaaaatt |
38169851 |
T |
|
| Q |
215 |
gaaattaattaataatcaagaacattagaaccttaaacacttaattaaagggtactaaaaaatcagcat-taagaacatgatttgagctcaagctttgga |
313 |
Q |
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| T |
38169850 |
gaaattaattaataatccagaacattagaaccttaaacacttaattaaagggtactaaaaaatcagcatctaagaacatgatttgagctcaagctttgga |
38169751 |
T |
|
| Q |
314 |
attggcattgacattccttggtcagtacaggtctggcaagtgcaatccgaaaagcggcataagtcacaatgagcacgcccaagaagtgcaacctttgcat |
413 |
Q |
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| T |
38169750 |
attggcattgacattccttggtcagtacaggtctggcaagtgcaatccgaaaagcggcataagtcacaatgagcacacccaagaagtgcaacctttgcat |
38169651 |
T |
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| Q |
414 |
gactgagtctgagtgcatcctctgtaaactctgcaactacctctttcttcttcataatcatcacatgtaattttgagtt |
492 |
Q |
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| T |
38169650 |
gactgagtctgagtgcatcctctgtaaactctgcaactacctctttcttcttcataatcatcacatgtaattttgagtt |
38169572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 334 - 473
Target Start/End: Complemental strand, 38153865 - 38153724
Alignment:
| Q |
334 |
gtcagtacaggtctggcaagtgcaatccgaaaagcggcataagtcacaatga--gcacgcccaagaagtgcaacctttgcatgactg-agtctgagtgca |
430 |
Q |
| |
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||||||||| ||||||||||||||||| ||||| |||||||| || || | |||| | |||||||||||||||||||||| ||| || |||||||| |
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| T |
38153865 |
gtcagtacaagtctggcaagtgcaatctgaaaaacggcataactcgcatccaaagcacacacaagaagtgcaacctttgcatg-ctgcagaatgagtgca |
38153767 |
T |
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| Q |
431 |
tcctctgtaaactctgcaactacctctttcttcttcataatca |
473 |
Q |
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| T |
38153766 |
ccctctgtaaactctgcgactgcctctttcttcttcatcatca |
38153724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 20791071 - 20791158
Alignment:
| Q |
17 |
cagaagcttgatatattagcatcagatttttcacagcaaccgtgcattgggacgcggtgttggattggtaaatgtttatccaaacaca |
104 |
Q |
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||||||||||||||| |||| ||||| || |||| ||||||||||||||||||||||| |||||||| |||||||||| |||||||| |
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| T |
20791071 |
cagaagcttgatatactagcttcagaattctcacggcaaccgtgcattgggacgcggtaatggattggcaaatgtttattcaaacaca |
20791158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 26135535 - 26135621
Alignment:
| Q |
17 |
cagaagcttgatatattagcatcagatttttcacagcaaccgtgcattgggacgcggtgttggattggtaaatgtttatccaaacac |
103 |
Q |
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||||||||||||||| |||| || || ||||||| ||||||||||||||||||||||| || |||||| ||| | |||||||||||| |
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| T |
26135535 |
cagaagcttgatatactagcttctgaattttcacggcaaccgtgcattgggacgcggtattagattggcaaacgcttatccaaacac |
26135621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 26937660 - 26937592
Alignment:
| Q |
15 |
cacagaagcttgatatattagcatcagatttttcacagcaaccgtgcattgggacgcggtgttggattg |
83 |
Q |
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||||||||||||| ||| |||| ||||| ||||||| | ||||||||||||||||| || |||||||| |
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| T |
26937660 |
cacagaagcttgacatactagcttcagaattttcacggtgaccgtgcattgggacgcagtattggattg |
26937592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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