View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17995_low_8 (Length: 353)
Name: NF17995_low_8
Description: NF17995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17995_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 29377312 - 29376983
Alignment:
| Q |
1 |
acattcttcagttttcatttcaccgattgcagtctctttgtcaattaggatatgagatcttgttatggtgctcactgaccctatctctttctttttgata |
100 |
Q |
| |
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|||||||||||||||||||||| | |||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
29377312 |
acattcttcagttttcatttcatctattgcagtgtctttgtcaattaagatatgggatcttgttatggtgctcactgaccctgtgtctttctttttgata |
29377213 |
T |
|
| Q |
101 |
tcttctcctagccctttaacacgttcttcaagttgttttacgtaattgatagcttccgttaccacatgaaccttatcaatctacacaaccattagataat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29377212 |
tcttctcctagccctttaacacgttcttcaagttgttttacgtaattgatagcttccgttaccacatgaaccttatcaatctacacaaccattagataat |
29377113 |
T |
|
| Q |
201 |
ttttattgtagcttctatccaattataacctatggagcacggcggacgccattaatataagaaacataggacatcgaccgctacatatatatttattaat |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29377112 |
ttttattgtagcttctatccaattataacctatggagcacggccgacgccattaatataagaaacataggacatcgaccgctacatatatatttattaat |
29377013 |
T |
|
| Q |
301 |
ttattataattaaatcaatgatcttcttaa |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
29377012 |
ttattataattaaatcaatgatcttcttaa |
29376983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 45039559 - 45039329
Alignment:
| Q |
1 |
acattcttcagttttcatttcaccgattgcagtctctttgtcaattaggatatgagatcttgttatggtgctcactgaccctatctctttctttttgata |
100 |
Q |
| |
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|||||||||||| |||||||||||||||||| | ||||||||||||| | | ||||||||||||||||||||| ||| ||| |||||||| || || |
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| T |
45039559 |
acattcttcagtgttcatttcaccgattgcaatgtctttgtcaattaaaacacgagatcttgttatggtgctcaatgatcctgcatctttcttcttaatg |
45039460 |
T |
|
| Q |
101 |
tcttctcctagccctttaacacgttcttcaagttgttttacgtaattgatagcttccgttaccacatgaaccttatcaatctacacaaccattagataat |
200 |
Q |
| |
|
|||||| ||||| |||| | |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
45039459 |
tcttcttctagctctttcaaacgttcttcaagttgtttcatgtaattgatagcttccgttaccacatgaaccttatcaatctacacagacattagatagt |
45039360 |
T |
|
| Q |
201 |
tttta--ttgtagcttctatccaattataac |
229 |
Q |
| |
|
||||| |||||||||||||||||| ||||| |
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| T |
45039359 |
ttttagtttgtagcttctatccaatgataac |
45039329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 45083031 - 45083259
Alignment:
| Q |
1 |
acattcttcagttttcatttcaccgattgcagtctctttgtcaattaggatatgagatcttgttatggtgctcactgaccctatctctttctttttgata |
100 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||| || |||||| |||| ||||||||||||||||||| ||| ||| || ||||||| ||||| |
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|
| T |
45083031 |
acattctttagtgttcatttcacccattgcagtgtcattgtcatcaaggagatgagatcttgttatggtgatcaatgatcccgcacctttcttcttgatg |
45083130 |
T |
|
| Q |
101 |
tcttctcctagccctttaacacgttcttcaagttgttttacgtaattgatagcttccgttaccacatgaaccttatcaatctacacaaccattagataat |
200 |
Q |
| |
|
|||||| ||||| |||| |||||||||| ||||||| ||||| |||| |||||| || ||||||||||| || |||||||| ||||||||||| |
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| T |
45083131 |
tcttcttctagctctttcacacgttcttgaagttgtgccacgtacttgacagcttctcctagtacatgaaccttgtccgtctacacagccattagataag |
45083230 |
T |
|
| Q |
201 |
ttttattgtagcttctatccaattataac |
229 |
Q |
| |
|
| || || ||||||||||||||| ||||| |
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|
| T |
45083231 |
tctttttatagcttctatccaatgataac |
45083259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 45065054 - 45064965
Alignment:
| Q |
142 |
gtaattgatagcttccgttaccacatgaaccttatcaatctacacaaccattagataatttttattg--tagcttctatccaattataac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||||||| |||| |||||||||| ||||| |
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|
| T |
45065054 |
gtaattgatagcttccgttaccacatgaaccgtatcaatctacatagcctttagataatttttattgtatagcatctatccaatgataac |
45064965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 45065471 - 45065334
Alignment:
| Q |
1 |
acattcttcagttttcatttcaccgattgcagtctctttgtcaattaggatatgagatcttgttatggtgctcactgaccctatctctttctttttgata |
100 |
Q |
| |
|
|||||||||||| ||||||||||| || | ||| |||||||||||||| | ||| |||||||||||| |||||| ||| ||| |||||||| || || |
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| T |
45065471 |
acattcttcagtgttcatttcacctatcgtagtgtctttgtcaattagtacatgggatcttgttatgttgctcattgatcctgcatctttcttcttaatg |
45065372 |
T |
|
| Q |
101 |
tcttctcctagccctttaacacgttcttcaagttgttt |
138 |
Q |
| |
|
| |||| | ||| |||| | ||| |||||||||||||| |
|
|
| T |
45065371 |
ttttcttcaagctctttcaaacgctcttcaagttgttt |
45065334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 30883270 - 30883203
Alignment:
| Q |
253 |
taatataagaaacataggacatcgac--cgctacatatatatttattaatttattataattaaatcaa |
318 |
Q |
| |
|
|||| ||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
30883270 |
taatgtaaaaaacataggacaccgacaccgctgcatatatatttattaatttattataattaaatcaa |
30883203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 32706381 - 32706343
Alignment:
| Q |
280 |
gctacatatatatttattaatttattataattaaatcaa |
318 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
32706381 |
gctacatttatatttattaatttattataattaaatcaa |
32706343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 5741631 - 5741669
Alignment:
| Q |
277 |
accgctacatatatatttattaatttattataattaaat |
315 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
5741631 |
accgctacacatatattaattaatttattataattaaat |
5741669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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