View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17996_high_1 (Length: 486)

Name: NF17996_high_1
Description: NF17996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17996_high_1
NF17996_high_1
[»] chr2 (5 HSPs)
chr2 (15-142)||(40626413-40626540)
chr2 (28-141)||(6457543-6457656)
chr2 (14-148)||(18665098-18665232)
chr2 (68-146)||(18881824-18881902)
chr2 (180-219)||(21208535-21208574)
[»] chr1 (9 HSPs)
chr1 (156-219)||(1931687-1931750)
chr1 (14-147)||(26793696-26793829)
chr1 (14-121)||(50004939-50005046)
chr1 (156-219)||(1937943-1938006)
chr1 (14-128)||(9383270-9383384)
chr1 (25-146)||(4076400-4076521)
chr1 (25-143)||(19806810-19806930)
chr1 (156-219)||(1948757-1948819)
chr1 (25-148)||(4950129-4950252)
[»] chr7 (4 HSPs)
chr7 (14-141)||(39644849-39644976)
chr7 (22-145)||(45884692-45884815)
chr7 (14-143)||(41482463-41482592)
chr7 (14-148)||(24429627-24429762)
[»] chr4 (2 HSPs)
chr4 (15-146)||(19181457-19181588)
chr4 (25-150)||(45413824-45413949)
[»] chr5 (1 HSPs)
chr5 (15-142)||(32529420-32529549)
[»] chr3 (2 HSPs)
chr3 (34-106)||(32794946-32795018)
chr3 (95-128)||(41865858-41865891)
[»] chr8 (2 HSPs)
chr8 (14-143)||(556722-556851)
chr8 (14-115)||(38503885-38503985)
[»] chr6 (1 HSPs)
chr6 (33-121)||(31799978-31800065)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 40626540 - 40626413
Alignment:
Q  15 aaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcatat 114  Q
    ||||| ||||||||||| ||||||||||| ||||||||||| ||||  |||| |||||| ||||| || |||||||||  |||||||| |||||||||||    
T  40626540 aaagggtgagtaggataggattagaaatatatttaaattatcctttcctattggtgcaccaaacagcagattgaatcaagatatgatagttttatcatat 40626441  T
Q  115 cttatctccctatcaagtgcaccaaacg 142  Q
    | | ||| ||||||| |||||| |||||    
T  40626440 cctgtcttcctatcatgtgcacgaaacg 40626413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 6457656 - 6457543
Alignment:
Q  28 gatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcatatcttatctccctat 127  Q
    ||||||||| ||||| ||||||| ||||  |||| |||| |||||| |||||||| |||||||||  |||||||| || ||||||||| | |||| ||||    
T  6457656 gatatgattggaaattgatttaatttatcattttctattggtgcaccaaacaacagattgaatcatgatatgatagttctatcatatcctgtctctctat 6457557  T
Q  128 caagtgcaccaaac 141  Q
    || |||||||||||    
T  6457556 catgtgcaccaaac 6457543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 18665232 - 18665098
Alignment:
Q  14 caaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcata 113  Q
    |||||| |||||| ||||| ||||||||||| ||||| |||| ||||  | || |||||| ||||||||||||  | ||  |||||||| ||||||||||    
T  18665232 caaagggtgagtaagatattattagaaataggtttaagttatcctttccttttggtgcacgaaacaacaaattacaccaagatatgatagttttatcata 18665133  T
Q  114 tcttatctccctatcaagtgcaccaaacggaccct 148  Q
    |  ||| | ||||||  ||||||||||||||||||    
T  18665132 ttctatgttcctatcttgtgcaccaaacggaccct 18665098  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 18881824 - 18881902
Alignment:
Q  68 gtgcactaaacaacaaattgaatcagtatatgataattttatcatatcttatctccctatcaagtgcaccaaacggacc 146  Q
    |||||| ||||| |||||| ||| || |||||||| |||||||||||||||||||  || || | ||||||||||||||    
T  18881824 gtgcaccaaacatcaaatttaattaggatatgatagttttatcatatcttatctctttaacatgcgcaccaaacggacc 18881902  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 21208535 - 21208574
Alignment:
Q  180 cattttaataacatagttttattcttatttttcattacag 219  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  21208535 cattttaataacatacttttattcatatttttcattacag 21208574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 1931750 - 1931687
Alignment:
Q  156 taggttgtacacaatctattatgtcattttaataacatagttttattcttatttttcattacag 219  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1931750 taggtcgtacacaatctattatgtcattttaataacattgttttattcttatttttcattacag 1931687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 26793829 - 26793696
Alignment:
Q  14 caaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcata 113  Q
    |||||| ||| ||||||| |||||||||||  ||||| |||| ||||| |||| |||||| |||||||  |||||||||| |||||||| || |||||||    
T  26793829 caaaggttgattaggataggattagaaataagtttaagttatccttttctattggtgcaccaaacaacggattgaatcaggatatgatagttctatcata 26793730  T
Q  114 tcttatctccctatcaagtgcaccaaacggaccc 147  Q
    || | ||| | ||||| ||||||||||| |||||    
T  26793729 tcatgtcttcttatcatgtgcaccaaacagaccc 26793696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 50004939 - 50005046
Alignment:
Q  14 caaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcata 113  Q
    |||||| ||| ||||||| |||||||||||| |||||||||| |||||||||| |||||| ||||| ||||||  || |  |||||||| ||||||||||    
T  50004939 caaagggtgattaggataggattagaaataggtttaaattatccttttttattggtgcaccaaacatcaaattagattaagatatgatagttttatcata 50005038  T
Q  114 tcttatct 121  Q
    || |||||    
T  50005039 tcctatct 50005046  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 1938006 - 1937943
Alignment:
Q  156 taggttgtacacaatctattatgtcattttaataacatagttttattcttatttttcattacag 219  Q
    ||||| ||||||||||||||||||||||||| |||||| |||||||| |||||||| |||||||    
T  1938006 taggtcgtacacaatctattatgtcattttagtaacattgttttattattattttttattacag 1937943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 9383270 - 9383384
Alignment:
Q  14 caaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcata 113  Q
    |||||| ||||||||||| |||||||||| | ||||| |||| | ||  |||| |||||| ||||||   ||| |||||| || ||||| ||||||||||    
T  9383270 caaagggtgagtaggataagattagaaattggtttaatttatccgttcctattggtgcaccaaacaatggatttaatcaggatgtgatagttttatcata 9383369  T
Q  114 tcttatctccctatc 128  Q
    |||| ||||||||||    
T  9383370 tcttttctccctatc 9383384  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 4076400 - 4076521
Alignment:
Q  25 taggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcatatcttatctccc 124  Q
    ||||||| |||||| ||||| ||||| |||| ||||  ||||  ||||| ||||| || ||| ||| ||  ||||||| | |||||||||| |||||||     
T  4076400 taggataggattagtaataggtttaatttatcctttcctattgatgcaccaaacaccagattaaataagggtatgatagtgttatcatatcctatctcct 4076499  T
Q  125 tatcaagtgcaccaaacggacc 146  Q
    ||||| ||||||||||| ||||    
T  4076500 tatcatgtgcaccaaaccgacc 4076521  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 19806810 - 19806930
Alignment:
Q  25 taggatatgattagaaatagatttaaattattcttttttattagtgca--ctaaacaacaaattgaatcagtatatgataattttatcatatcttatctc 122  Q
    ||||||| |||||||||||| ||||| |||| ||||  ||||  ||||  | ||||| || ||||||| || ||| |||| | |||||||||| ||||||    
T  19806810 taggataggattagaaataggtttaatttatcctttcctattgatgcaaaccaaacaccagattgaataaggataggatagtgttatcatatcctatctc 19806909  T
Q  123 cctatcaagtgcaccaaacgg 143  Q
    | ||||| |||||||||||||    
T  19806910 cttatcatgtgcaccaaacgg 19806930  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 1948819 - 1948757
Alignment:
Q  156 taggttgtacacaatctattatgtcattttaataacatagttttattcttatttttcattacag 219  Q
    ||||| |||| |||| |||||| |||||| | |||||| |||||||||||||||||||||||||    
T  1948819 taggtggtacgcaatatattatatcattt-agtaacattgttttattcttatttttcattacag 1948757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 4950252 - 4950129
Alignment:
Q  25 taggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcatatcttatctccc 124  Q
    ||||||||||||  ||||   ||||||||||  |||| ||||  ||||| ||||| ||||||||| ||  ||| ||||  ||||||||||||||| | |     
T  4950252 taggatatgattgaaaatgagtttaaattatcattttctattgatgcaccaaacatcaaattgaaacaagataggatatgtttatcatatcttattttct 4950153  T
Q  125 tatcaagtgcaccaaacggaccct 148  Q
    ||||| ||||||||||| ||||||    
T  4950152 tatcatgtgcaccaaactgaccct 4950129  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 39644976 - 39644849
Alignment:
Q  14 caaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcata 113  Q
    |||||||||||||||||| ||||| |||| | ||||| |||| ||||| |||| | |||| |||||||||||||||  |  |||||||| ||||||||||    
T  39644976 caaaggatgagtaggataggattataaatgggtttaagttatccttttctattggcgcaccaaacaacaaattgaaatatgatatgatagttttatcata 39644877  T
Q  114 tcttatctccctatcaagtgcaccaaac 141  Q
    || | ||| ||||||| |||||||||||    
T  39644876 tcctgtcttcctatcacgtgcaccaaac 39644849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 45884692 - 45884815
Alignment:
Q  22 gagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcatatcttatct 121  Q
    |||||||||||||||| |||| | |||||||||| | ||  || | ||||||||||||||| |||||||||  ||||||||||||||||||||| | | |    
T  45884692 gagtaggatatgattaaaaatggttttaaattatccattcatactggtgcactaaacaacatattgaatcaagatatgataattttatcatatcctgttt 45884791  T
Q  122 ccctatcaagtgcaccaaacggac 145  Q
     ||||||| ||||||| |||||||    
T  45884792 tcctatcatgtgcaccgaacggac 45884815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 41482463 - 41482592
Alignment:
Q  14 caaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcata 113  Q
    |||||| ||||||||||||||||| |||||| ||||| |||| ||||  | || |||||| ||||| |  ||| |||||| | |||||| ||||||| ||    
T  41482463 caaagggtgagtaggatatgattaaaaataggtttaagttatcctttcctgttggtgcaccaaacagcgcattaaatcaggagatgatagttttatccta 41482562  T
Q  114 tcttatctccctatcaagtgcaccaaacgg 143  Q
    || | ||| ||||||| |||||||||||||    
T  41482563 tcatgtcttcctatcatgtgcaccaaacgg 41482592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 24429762 - 24429627
Alignment:
Q  14 caaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtata-tgataattttatcat 112  Q
    |||||| |||||| |||| ||||| |||||| ||||||||||  |||| |||| |||||  || || || | |||||||| ||| ||||| |||||||||    
T  24429762 caaagggtgagtaagataggattataaatagttttaaattatcattttctattggtgcatcaagcagcagaatgaatcaggataatgatagttttatcat 24429663  T
Q  113 atcttatctccctatcaagtgcaccaaacggaccct 148  Q
    || |  ||| ||||||  ||||||||||| ||||||    
T  24429662 atttcgtcttcctatcttgtgcaccaaacagaccct 24429627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 19181457 - 19181588
Alignment:
Q  15 aaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcatat 114  Q
    ||||||||||||||||| |||||||||||| ||||| ||||  | |  | || |||||| |||||| | |||| ||||| ||| ||||||||||||||||    
T  19181457 aaaggatgagtaggataggattagaaataggtttaatttatcatatcatgttggtgcaccaaacaatagattggatcaggataggataattttatcatat 19181556  T
Q  115 cttatctccctatcaagtgcaccaaacggacc 146  Q
    | | |||| |||||| ||||||||||||||||    
T  19181557 catgtctctctatcatgtgcaccaaacggacc 19181588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 45413824 - 45413949
Alignment:
Q  25 taggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcatatcttatctccc 124  Q
    ||||||| |||  ||||||| ||||| |||| ||||  |||| |||||| |||||||  |||||||||  |||||||| || |||| |||| | ||||||    
T  45413824 taggataggataggaaataggtttaatttatcctttcctattggtgcaccaaacaaccgattgaatcaagatatgatagttctatcctatcctgtctccc 45413923  T
Q  125 tatcaagtgcaccaaacggaccctca 150  Q
    ||||||||||||||||||||||||||    
T  45413924 tatcaagtgcaccaaacggaccctca 45413949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 32529420 - 32529549
Alignment:
Q  15 aaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaa-tcag-tatatgataattttatcat 112  Q
    ||||||||| || ||||||||||||||||  ||||| ||||||||||||||| |||||| ||||| |  |||||| | || ||||||||| |||||||||    
T  32529420 aaaggatgaataagatatgattagaaataagtttaatttattcttttttattggtgcaccaaacagcggattgaagtaagatatatgatagttttatcat 32529519  T
Q  113 atcttatctccctatcaagtgcaccaaacg 142  Q
    ||||| ||| | ||||| ||||| ||||||    
T  32529520 atcttgtcttcttatcatgtgcatcaaacg 32529549  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 32794946 - 32795018
Alignment:
Q  34 attagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattt 106  Q
    |||||||||| |||||||||||  |||||||||||||||| || ||||||||| |||||| ||||||||||||    
T  32794946 attagaaataaatttaaattatcattttttattagtgcaccaaccaacaaattaaatcaggatatgataattt 32795018  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 41865858 - 41865891
Alignment:
Q  95 atatgataattttatcatatcttatctccctatc 128  Q
    ||||||||||||||||||||||||||||||||||    
T  41865858 atatgataattttatcatatcttatctccctatc 41865891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 556851 - 556722
Alignment:
Q  14 caaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcata 113  Q
    |||||| ||| |||||||||||||||||||| ||||| ||||  |||| ||||  ||||| ||||| |   ||| ||||| |||||||   |||||||||    
T  556851 caaagggtgaataggatatgattagaaataggtttaatttatcattttctattgttgcacgaaacagcggtttggatcaggatatgattggtttatcata 556752  T
Q  114 tcttatctccctatcaagtgcaccaaacgg 143  Q
    || ||||||| ||||| ||||| |||||||    
T  556751 tcctatctccttatcatgtgcatcaaacgg 556722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 38503885 - 38503985
Alignment:
Q  14 caaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcata 113  Q
    |||||| ||||||||||| | |||||| |   ||||| |||||||||  | || |||||| ||||||||||||||| ||| |||||||| ||||||| ||    
T  38503885 caaagggtgagtaggatagggttagaagtgagtttaagttattctttcct-ttggtgcaccaaacaacaaattgaaacaggatatgatagttttatccta 38503983  T
Q  114 tc 115  Q
    ||    
T  38503984 tc 38503985  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 31799978 - 31800065
Alignment:
Q  33 gattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcatatcttatct 121  Q
    |||||||||||| ||||| ||||| |||||||||  ||||  ||| |||||||||||| |  |||  |||||||||||| |||||||||    
T  31799978 gattagaaatag-tttaatttattattttttattgatgcatcaaataacaaattgaattaagataatataattttatcacatcttatct 31800065  T

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