View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17996_low_1 (Length: 520)

Name: NF17996_low_1
Description: NF17996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17996_low_1
NF17996_low_1
[»] chr4 (2 HSPs)
chr4 (1-475)||(170327-170801)
chr4 (2-162)||(9837658-9837818)
[»] chr6 (1 HSPs)
chr6 (3-53)||(33559671-33559721)


Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 170327 - 170801
Alignment:
Q  1 ccaacttcttcatctgtctttggacactaatcaaatgagagttttaagtgatttgtcaatgaggtattcacaacctttgaattgctcatatcaactttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  170327 ccaacttcttcatctgtctttggacactaatcaaatgagagttttaagtgatttgtcaatgaggtattcacaacctttgaattgctcatatcaactttct 170426  T
Q  101 ctagcacctttttaatgtagcttttatgagagagtcataattttctagcactcatatccttgaggtagtcgttttcgtgtagactacttacggaaatcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  170427 ctagcacctttttaatgtagcttttatgagagagtcataattttctagcactcatatccttgagatagtcgttttcgtgtagactacttacggaaatcaa 170526  T
Q  201 gttctttttcaattttgaaatacctcacttgaatgtagtgaaccacttccattgcagcgtcatgtggtaagaacaaccaaagtcaagaatccacacataa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  170527 gttctttttcaattttgaaatacctcacttgaatgtagtgaaccacttccagtgcggcgtcatgtggtaagaacaaccaaagtcaagaatccacacataa 170626  T
Q  301 gcacacttgtcaggtgaaacacaaataatatctccttcactgtcaaaatcatcggtttggaccacatttgcttaactggacggatcatattttttgctcg 400  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  170627 gcacacttgccaggtgaaacacaaataatatctccttcactgtcaaaatcatcggtttggaccacatttgcttaactggacgggtcatattttttgttcg 170726  T
Q  401 gacaatacctctttcaatgcttgatatgttaccaatcaaagcactaaattgttattctgttctttaattttgatc 475  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  170727 gacaatacctctttcaatgcttgatatgttaccaaccaaagcactaaattgttattttgttctttaattttgatc 170801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 162
Target Start/End: Complemental strand, 9837818 - 9837658
Alignment:
Q  2 caacttcttcatctgtctttggacactaatcaaatgagagttttaagtgatttgtcaatgaggtattcacaacctttgaattgctcatatcaactttctc 101  Q
    |||||||| ||| |||||||  |||||||||||| ||||  || || |||||||||||||| ||| || ||  |||  |||||||||| |||| ||| ||    
T  9837818 caacttctacatttgtctttaaacactaatcaaacgagaacttaaaatgatttgtcaatgaagtactcgcagtcttcaaattgctcatgtcaaatttttc 9837719  T
Q  102 tagcacctttttaatgtagcttttatgagagagtcataattttctagcactcatatccttg 162  Q
    || ||||| || ||  |||||||| | ||| || ||||| |||||||||||| | ||||||    
T  9837718 taacacctattcaacatagctttttttagaaagccataactttctagcactcttgtccttg 9837658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 33559671 - 33559721
Alignment:
Q  3 aacttcttcatctgtctttggacactaatcaaatgagagttttaagtgatt 53  Q
    ||||||| ||||| |||||||||||||||| |||||||| || ||||||||    
T  33559671 aacttctgcatctatctttggacactaatccaatgagagcttcaagtgatt 33559721  T

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