View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17996_low_3 (Length: 361)
Name: NF17996_low_3
Description: NF17996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17996_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 158 - 346
Target Start/End: Complemental strand, 3285388 - 3285200
Alignment:
| Q |
158 |
ccttttaattagcgatatgatcccattagtaaggaagttcttatgcatcatcacctgcaaaattagtcaagcaaagtctcatcactgtaggccacattgt |
257 |
Q |
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| T |
3285388 |
ccttttaattagcgatatgatcccattagtaaggaagttcttatgcatcatcacctccaaaattagtcaagcaaagtctcatcactttaggtcacattgt |
3285289 |
T |
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| Q |
258 |
tttgttaataagcttagtttttgctaaaaataccatatcatatattgtaattagacacattcaatcaaataaattatttttgcattttt |
346 |
Q |
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| T |
3285288 |
tttgttaataagcttagtttttgctaaaagtaccatatcatatattgtaattagacacattcaatcaaacaaattatttttgcattttt |
3285200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 3285745 - 3285594
Alignment:
| Q |
1 |
actcttttcataaacagtttctaaaacgaccctttttacaaccattaatttagaataatgcaaacttgtatacttaga---atatcgcaatatcattgga |
97 |
Q |
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| T |
3285745 |
actcttttcataaactgtttctaaaacgaccctttttacaaccattaatttagaataatgcaaacttgaacggtcaaagctatatcgcaatatcattgga |
3285646 |
T |
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| Q |
98 |
ttcaatatttatttttcataaaaacttgtatacttattgttgtacgaaggat |
149 |
Q |
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| T |
3285645 |
ttcaatatttatttttcataaaaacttgtatacttattgttgtacgaaggat |
3285594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 24503044 - 24503100
Alignment:
| Q |
269 |
gcttagtttttgctaaaaataccatatcatatattgtaattagacacattcaatcaa |
325 |
Q |
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| T |
24503044 |
gcttaatttttgctataaatatcagatcatatactttaattagacacatccaatcaa |
24503100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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