View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17997_high_1 (Length: 644)
Name: NF17997_high_1
Description: NF17997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17997_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 193 - 492
Target Start/End: Original strand, 41504055 - 41504361
Alignment:
| Q |
193 |
atctacattttttcattgcaattctgaatattatcttttctcactttcgaagaaaagtagta----attgtttcatcaagttgat---gataagtactgt |
285 |
Q |
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| T |
41504055 |
atctacattttttcattgcaattctgaatattatcttt-ctcactttcgaagaaaagtagtacgtaattgtttcatcaagttgatgatgataagtactgt |
41504153 |
T |
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| Q |
286 |
atcgaaagcaacccaatcacttgcatgaag-nnnnnnngcaacccaatcactatactcaacttctaatcctccgccacgtcaacaatcacaaacaaatct |
384 |
Q |
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| T |
41504154 |
atcgaaagcaacccaatcacttgcatgaagaaaaaaaagcaacccaatcactatactcaacttctaatcctccgccacgtcaacaatcagaaacaaatct |
41504253 |
T |
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| Q |
385 |
acggtcaaaaagaaacgatcacgtatcatnnnnnnnncaccgcgtagcatcttatctttacctctctttatccacgacaagatagataaatggatagtgt |
484 |
Q |
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| T |
41504254 |
acggtcaaaaagaaacgatcacgtatcataaaaaaaacaccgcgtagcatcttatctttacctctctttatccacgacaagatagataaatggatagtgt |
41504353 |
T |
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| Q |
485 |
tgtgttgt |
492 |
Q |
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| T |
41504354 |
tgtgttgt |
41504361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 41503759 - 41503881
Alignment:
| Q |
18 |
atatacccacgtggattatccctgctaaatatgttcctaatttcagaattaagtttagaccatcatttgggatgccttatcaaccaaggctttagttttt |
117 |
Q |
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| T |
41503759 |
atatacccacgtgaattatccctgctaaatatgttcctaatttcagaattaagtttagaccatcatttgggatgccttatcaaccaaggctttagttttt |
41503858 |
T |
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| Q |
118 |
cactaggctactcttggtgttta |
140 |
Q |
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| T |
41503859 |
cactaggctactcttggtgttta |
41503881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 41503945 - 41503998
Alignment:
| Q |
141 |
aaagaagaaatagaagaataaagagaaagttgttaaataatttttacaattaat |
194 |
Q |
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| T |
41503945 |
aaagaagaaatagaagaataaagagaaagttgttaaataatttttacaattaat |
41503998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 603 - 631
Target Start/End: Original strand, 41504467 - 41504495
Alignment:
| Q |
603 |
cttcaatttcatttcatgtctcggatcct |
631 |
Q |
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| T |
41504467 |
cttcaatttcatttcatgtctcggatcct |
41504495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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