View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17997_high_4 (Length: 452)
Name: NF17997_high_4
Description: NF17997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17997_high_4 |
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| [»] scaffold0010 (1 HSPs) |
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| [»] scaffold0716 (1 HSPs) |
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| [»] scaffold0894 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 178 - 428
Target Start/End: Complemental strand, 45633855 - 45633605
Alignment:
| Q |
178 |
gagaaatgatagatcgaccactttgttttgtacaccctttactacacctgctgatgtggcatcttttgcctggtggaaattaaattatttttcatttaaa |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45633855 |
gagaaatgatagatcgaccactttgttttgtacaccctttactacacctgctgatgtggcatcttttgcctggtggaaattaaattatttttcatttaaa |
45633756 |
T |
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| Q |
278 |
aaacatattacaaatcaaaccttacacaccctttctctctcactttcatttatcagtttaatttcttctccgctctctatctctcagttccaatttccag |
377 |
Q |
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||||| | |||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45633755 |
aaacaaaatacatattaaaccttacacaccctctctctctcactttcatttatcagtttaatttcttctccgctctctgtctctcagttccaatttccag |
45633656 |
T |
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| Q |
378 |
ccaaccatgtagccgccttcactgcaaacgacaccacactcgtgccgtatc |
428 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
45633655 |
ccaaccatgtagccgccttcactccaaacgacaccacactcgcgccgtatc |
45633605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 11 - 177
Target Start/End: Original strand, 11136570 - 11136736
Alignment:
| Q |
11 |
caaaggcacatataggtcaatatttgataatggaacttacaacaggacaaaacaattcagccatcaaatacgacttcaaaaaatatgtccatgagaaaag |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11136570 |
caaaggcacatataggtcaatatttgataatggaacttacaacaggataaaacaattacgccatcaaacacgacttcaaaaaatatgtccatgagaaaag |
11136669 |
T |
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| Q |
111 |
tgcttggaaactatatcaaaaactaccattaccttttgttatatatcaccagaagtcttatttttaa |
177 |
Q |
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| T |
11136670 |
tgcttggaaactatatcaaaaactaccattaccttttgttatatatcaccagaagtcttatttttaa |
11136736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 11 - 177
Target Start/End: Original strand, 7314051 - 7314217
Alignment:
| Q |
11 |
caaaggcacatataggtcaatatttgataatggaacttacaacaggacaaaacaattcagccatcaaatacgacttcaaaaaatatgtccatgagaaaag |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7314051 |
caaaggcacatataggtcaatatttgataatggaacttacaacaggataaaacaattatgccatcaaatacgacttcaaaaaatatgtccatgagaaaag |
7314150 |
T |
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| Q |
111 |
tgcttggaaactatatcaaaaactaccattaccttttgttatatatcaccagaagtcttatttttaa |
177 |
Q |
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| T |
7314151 |
tgcttggaaactatatcaaaaactaccattaccttttgttatatatcaccagaagtcttatttttaa |
7314217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 360
Target Start/End: Original strand, 19185153 - 19185220
Alignment:
| Q |
291 |
atcaaaccttacacaccctttctctctcactttcatttatcagtttaatttcttctccgctctctatctc |
360 |
Q |
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| T |
19185153 |
atcaaaccttacacaccc--tctttctcacttccatttctcagttttatttcttcgcctctctctgtctc |
19185220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 246036 - 245939
Alignment:
| Q |
11 |
caaaggcacatataggtcaatatttgataatggaacttacaacaggacaaaacaattcagccatcaaatacgacttcaaaaaatatgtccatgagaaa |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
246036 |
caaatgcacatataggtcaatatttgataatggaacttacaacaggacaaaacaattctgccatcaaatacgactttaaaaaatatgtccatgagaaa |
245939 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 37282162 - 37282259
Alignment:
| Q |
11 |
caaaggcacatataggtcaatatttgataatggaacttacaacaggacaaaacaattcagccatcaaatacgacttcaaaaaatatgtccatgagaaa |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
37282162 |
caaatgcacatataggtcaatatttgataatggaacttacaacgggacaaaacaattctgccatcaaatacgactttaaaaaatatgtccatgagaaa |
37282259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0716 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0716
Description:
Target: scaffold0716; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 7292 - 7245
Alignment:
| Q |
11 |
caaaggcacatataggtcaatatttgataatggaacttacaacaggac |
58 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7292 |
caaaggcacatataggtcaatatttgataatggaacttacaacaggac |
7245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 40934032 - 40933961
Alignment:
| Q |
38 |
taatggaacttacaacaggacaaaacaattcagccatcaaatacgac-ttcaaaaaatatgtccatgagaaa |
108 |
Q |
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|||||||| |||||| |||||||||||||||||| |||||||||||| || ||||||||||||||||||||| |
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| T |
40934032 |
taatggaatttacaaaaggacaaaacaattcagctatcaaatacgactttaaaaaaatatgtccatgagaaa |
40933961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0894 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0894
Description:
Target: scaffold0894; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 47 - 1
Alignment:
| Q |
11 |
caaaggcacatataggtcaatatttgataatggaacttacaacagga |
57 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47 |
caaaggcacatataggtcaatatttgataatggaacttacaacagga |
1 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 11233029 - 11232957
Alignment:
| Q |
38 |
taatggaacttacaacaggacaaaacaattcagccatcaaatacgac--ttcaaaaaatatgtccatgagaaa |
108 |
Q |
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|||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||||| |
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| T |
11233029 |
taatggaatttacaaaaggacaaaacaattcagctatcaaatacgacttttcaaaaaatacgtccatgagaaa |
11232957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 23348440 - 23348366
Alignment:
| Q |
33 |
tttgataatggaacttacaacaggacaaaacaattcagccatcaaatacgacttcaaaaaatatgtccatgagaaa |
108 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||||||| |
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| T |
23348440 |
tttgataatggaacttacaacaaaacaaaacaatttttatatcaaatacgactt-aaaaaatctgtccatgagaaa |
23348366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 341
Target Start/End: Original strand, 29384816 - 29384906
Alignment:
| Q |
249 |
ggtggaaattaaattatttttcatttaaaaaa-catattacaaatcaaaccttacacaccctttctctctcactttcatttatcagtttaattt |
341 |
Q |
| |
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||||||||||||||||||||| |||||||||| || | || | |||||||||||||||||| |||||||||||| ||||| ||| ||| |||| |
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| T |
29384816 |
ggtggaaattaaattattttttatttaaaaaaacaaaata-agatcaaaccttacacaccc--tctctctcacttccatttctcaatttcattt |
29384906 |
T |
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