View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17997_high_6 (Length: 410)
Name: NF17997_high_6
Description: NF17997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17997_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 52810312 - 52810707
Alignment:
| Q |
1 |
cttgagatgggttaaagggtaaaactcttaccaatgagttgaaggtcaaaatattatta---attaaattcatctaatgtttggggttctttcttccatc |
97 |
Q |
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| T |
52810312 |
cttgagatgggttaaagggtaaaactcttaccaatgagttgaaggtcaaaatattattattaattaaattcatctaatgtttggg-ttctttcttccatc |
52810410 |
T |
|
| Q |
98 |
ttttttagaaattaatatagcttgcttgctatatcactttgtttggttcaacttcaagttaataatgttttgttttatctcagagctagcttaccgaaaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52810411 |
ttttttagaaattaatatagcttgcttgctatatcactttgtttggttcaacttcaagttaataatgttttgttttatctcagagctagcttaccgaaaa |
52810510 |
T |
|
| Q |
198 |
tcatcactgtggagaatctttctacaacctttgatggcagatctagaacccagaacctcaaaaagtttgtctgccttggctggagcaacatcccatttcc |
297 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52810511 |
tcatcactgtgcagaatctttctacaacctttgatggcagatctagaacccagaacctcaaaaagtttgtctgccttggctggagcaacatcccatttcc |
52810610 |
T |
|
| Q |
298 |
tagcagcagctgtaaaaacctgagcaacccttacgacagggtttcctgatggcttcaagtatctatatttaggagatcctgataaaaatgtcaaaag |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52810611 |
tagcagcagctgtaaaaacctgagcaacccttacgacagggtttcctgatggcttcaagtatctatatttaggagatcctgataaaaatgtcaaaag |
52810707 |
T |
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