View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17997_high_9 (Length: 231)
Name: NF17997_high_9
Description: NF17997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17997_high_9 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 219595 - 219365
Alignment:
| Q |
1 |
tgacaaactaaattccaataatactatatatagctaaaagttaaaacttgaaagtaacaatgaattaatattttaaaatgcaaaccttgtagacatatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
219595 |
tgacaaactaaattccaataatactatatatagctaaaagttaaaacttgaaagtaacaatgaattaatattttaaaatgcaaaccttgtagacatatgg |
219496 |
T |
|
| Q |
101 |
gcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
219495 |
gcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataagca |
219396 |
T |
|
| Q |
201 |
taagggtcataaaacccttcaattaaaccat |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
219395 |
taagggtcataaaacccttcaattaaaccat |
219365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 31651709 - 31651841
Alignment:
| Q |
99 |
gggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataag |
198 |
Q |
| |
|
|||||||| || |||||||| |||||||||| || ||| ||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31651709 |
gggcatcccggataatcaaattcatctgaatcagctttcctcatccgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataag |
31651808 |
T |
|
| Q |
199 |
cataagggtcataaaacccttcaattaaaccat |
231 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||| |
|
|
| T |
31651809 |
catcagggtcataaaacccttcaatcaaaccat |
31651841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University