View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17997_low_10 (Length: 250)
Name: NF17997_low_10
Description: NF17997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17997_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 49164834 - 49165076
Alignment:
| Q |
1 |
actacattttctaactttgttacaaaatgaaaatccagcatgtccctttaaattttgaacaaaagtatttgaaggaacagcaaagcgaaatcacccttca |
100 |
Q |
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| T |
49164834 |
actacattttctaactttgttacaaaatgaaaatccagcatgtccctttaaattttgaacaaaagtatttgaaggaacagcaaagcgaaatcgcccttca |
49164933 |
T |
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| Q |
101 |
ggtcttggatgatgagagaacatggattgttaaatattgtctgagaaaaatgagtaacggatggaaaacatttgtatctgacaataatttgaaattggga |
200 |
Q |
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| T |
49164934 |
ggtcttggatgatgagagaacatggattgttaaatattgtctgagaaaaatgagtaacggatggaaaacatttgtatctgacaataatttgaaattggga |
49165033 |
T |
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| Q |
201 |
gatgtttgcctttttgagatgatcaatagcaaatcctatgctt |
243 |
Q |
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| T |
49165034 |
gatgtttgcctttttgagatgatcaatagcaaatcctatgctt |
49165076 |
T |
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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 52 - 232
Target Start/End: Original strand, 43751329 - 43751509
Alignment:
| Q |
52 |
attttgaacaaaagtatttgaaggaacagcaaagcgaaatcacccttcaggtcttggatgatgagagaacatggattgttaaatattgtctgagaaaaat |
151 |
Q |
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| T |
43751329 |
attttgaacaaaagtatatgaaggaaaaacaaagcgttatcgtccttcaagtcttggataatgggagaacttggaatgttaagcattgggggagacatgt |
43751428 |
T |
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| Q |
152 |
gagtaacggatggaaaacatttgtatctgacaataatttgaaattgggagatgtttgcctttttgagatgatcaatagcaa |
232 |
Q |
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| T |
43751429 |
tagtactggatggaagaaatttgcatttgataataatttgaaagtgggagatgtttgtctttttgagatgatcaaaagcaa |
43751509 |
T |
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