View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17997_low_3 (Length: 490)

Name: NF17997_low_3
Description: NF17997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17997_low_3
NF17997_low_3
[»] chr6 (10 HSPs)
chr6 (52-365)||(6941543-6941856)
chr6 (51-229)||(6953182-6953363)
chr6 (51-220)||(6920021-6920193)
chr6 (411-490)||(6941418-6941497)
chr6 (65-220)||(6944261-6944412)
chr6 (116-191)||(6933949-6934024)
chr6 (411-458)||(3101146-3101193)
chr6 (411-458)||(8770538-8770585)
chr6 (411-458)||(18999261-18999308)
chr6 (416-455)||(31834013-31834052)
[»] chr7 (7 HSPs)
chr7 (118-246)||(1984414-1984544)
chr7 (411-458)||(24954857-24954904)
chr7 (411-458)||(33438566-33438613)
chr7 (411-458)||(40210091-40210138)
chr7 (411-455)||(28363451-28363495)
chr7 (417-455)||(44959874-44959912)
chr7 (245-286)||(1984335-1984376)
[»] chr8 (6 HSPs)
chr8 (411-458)||(33365080-33365127)
chr8 (414-458)||(232068-232112)
chr8 (414-458)||(708479-708523)
chr8 (414-458)||(745691-745735)
chr8 (414-458)||(869586-869630)
chr8 (411-458)||(31627631-31627678)
[»] chr5 (7 HSPs)
chr5 (411-458)||(23927889-23927936)
chr5 (412-458)||(40484894-40484940)
chr5 (411-458)||(16049288-16049335)
chr5 (411-458)||(35667293-35667340)
chr5 (414-458)||(9888735-9888778)
chr5 (411-455)||(26363328-26363372)
chr5 (411-452)||(29289427-29289468)
[»] chr3 (5 HSPs)
chr3 (411-458)||(39085341-39085388)
chr3 (411-458)||(12026178-12026225)
chr3 (411-458)||(4774439-4774486)
chr3 (411-458)||(48433152-48433199)
chr3 (411-455)||(52497448-52497492)
[»] chr1 (9 HSPs)
chr1 (411-458)||(14795517-14795564)
chr1 (411-458)||(19585031-19585078)
chr1 (411-458)||(31200549-31200596)
chr1 (411-458)||(51251228-51251275)
chr1 (411-458)||(21968806-21968853)
chr1 (411-458)||(40709635-40709682)
chr1 (411-458)||(50049890-50049937)
chr1 (412-455)||(8049413-8049456)
chr1 (411-458)||(8059094-8059141)
[»] chr2 (7 HSPs)
chr2 (413-458)||(34899780-34899825)
chr2 (411-458)||(8423252-8423299)
chr2 (411-458)||(22417059-22417106)
chr2 (411-458)||(30356918-30356965)
chr2 (411-440)||(8371394-8371423)
chr2 (413-458)||(17475122-17475167)
chr2 (458-490)||(7940552-7940584)
[»] scaffold0001 (1 HSPs)
scaffold0001 (411-458)||(397450-397497)
[»] chr4 (6 HSPs)
chr4 (411-458)||(890323-890370)
chr4 (411-458)||(32951239-32951286)
chr4 (417-455)||(43342456-43342494)
chr4 (414-458)||(23723445-23723488)
chr4 (414-458)||(27925242-27925286)
chr4 (411-455)||(28044130-28044174)
[»] scaffold0354 (1 HSPs)
scaffold0354 (163-204)||(8372-8413)


Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-150; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 52 - 365
Target Start/End: Complemental strand, 6941856 - 6941543
Alignment:
Q  52 attgcatggatattatgatgtttaaggaattttacattacacatgtttcttggttcattcataggttgtttcctacttcactataaatgttgtttattag 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6941856 attgcatggatattatgatgtttaaggaattttacattacacatgtttcttggttcattcataggttgtttcctacttcactataaatgttgtttattag 6941757  T
Q  152 aatcaatttttattttgatttggatatatttactttgctttctgattaattttgtacgcaagttgatagcttggattgcattgtgccaaactaaaaggta 251  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  6941756 actcaatttttattttgatttggatatatttactttgctttctgattaattttgtacgcaagttgatagcttgcattgcattgtgccaaact-aaaggta 6941658  T
Q  252 agcaacaatacattgaaataattcccttgagaaacttttactcaattcaacacaaaagaa-ttnnnnnnnctctacgggtatgaactagaggtgtactgt 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||||    
T  6941657 agcaacaatacattgaaataattcccttgagaaacttttactcaattcaacacaaaagaatttaaaaaaactctacgggtatgaactagaggtgtactgt 6941558  T
Q  351 gtacatgggttgggt 365  Q
    |||||||||||||||    
T  6941557 gtacatgggttgggt 6941543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 6953363 - 6953182
Alignment:
Q  51 gattgcatggatattat--gatgtttaaggaattttacattacacatgtttcttggttcattcataggttgtttcctacttcactataa-atgttgttta 147  Q
    |||||||||||||||||  ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| ||| |||  |||||||||    
T  6953363 gattgcatggatattatatgatgtttaaggcattttacattacacatgtttcttgctacattcataggttgtttcctactttactctaatttgttgttta 6953264  T
Q  148 ttagaatcaatttttattttgatttggatatatttactttgctttctgattaattttgtacgcaagttgatagcttggattg 229  Q
    || ||||  ||||||||||||||||||||| |||| |  |||||||||||| ||||||||| |||| |||||| ||| ||||    
T  6953263 ttggaatacatttttattttgatttggatacattttccatgctttctgatttattttgtacacaaggtgatagtttgaattg 6953182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 51 - 220
Target Start/End: Complemental strand, 6920193 - 6920021
Alignment:
Q  51 gattgcatggatattat--gatgtttaaggaattttacattacacatgtttcttggttcattcataggttgtttcctacttcactataa-atgttgttta 147  Q
    |||||||||||||||||  |||||| |||| |||||||||||||||||||||||| | ||||||||||||||||||||||| ||| |||  |||||||||    
T  6920193 gattgcatggatattatatgatgttcaaggcattttacattacacatgtttcttgctacattcataggttgtttcctactttactctaatttgttgttta 6920094  T
Q  148 ttagaatcaatttttattttgatttggatatatttactttgctttctgattaattttgtacgcaagttgatag 220  Q
    || ||||  ||||||||||||||||||||| | |||| ||||||||||||| ||||||||| || ||||||||    
T  6920093 ttggaatacatttttattttgatttggatacaattaccttgctttctgattcattttgtacacatgttgatag 6920021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 411 - 490
Target Start/End: Complemental strand, 6941497 - 6941418
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaagagatttacttttcccaccctacgcctttcct 490  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6941497 gtggattgggttgggtgattgggtggatatggttttacaaaatgaaaagagatttacttttcccaccctacgcctttcct 6941418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 65 - 220
Target Start/End: Complemental strand, 6944412 - 6944261
Alignment:
Q  65 tatgatgtttaaggaattttacattacacatgtttcttggttcattcataggttgtttcctacttcactataaatgttgtttattagaatcaatttttat 164  Q
    |||||||||||| | ||||||||||||| |||||    ||| |||||||||||||||||||||   ||||||||||| ||||||| |||| |||||| ||    
T  6944412 tatgatgtttaaagtattttacattacatatgtt----ggtacattcataggttgtttcctaccatactataaatgtcgtttattggaataaattttcat 6944317  T
Q  165 tttgatttggatatatttactttgctttctgattaattttgtacgcaagttgatag 220  Q
    |||||||||| || |||||| ||| |||| |||| |||||| || |||| ||||||    
T  6944316 tttgatttggttacatttaccttgttttcagatttattttgcacacaaggtgatag 6944261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 6934024 - 6933949
Alignment:
Q  116 gttgtttcctacttcactataaatgttgtttattagaatcaatttttattttgatttggatatatttactttgctt 191  Q
    |||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||    
T  6934024 gttgtttcctacgttactataaatgttgtttattggaatcaatttttattttgatttggatacatttaccttgctt 6933949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 3101193 - 3101146
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  3101193 gtgggttgggttgggtgattgggtggatatggttttaaaaaatgaaaa 3101146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 8770585 - 8770538
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  8770585 gtgggttgggttgggtgattgggtggatatggttttaaaaaatgaaaa 8770538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 18999261 - 18999308
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    ||||||||||||| ||||||||||| |||| |||||| ||||||||||    
T  18999261 gtgggttgggttgagtgattgggtgaatatggttttaaaaaatgaaaa 18999308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 455
Target Start/End: Original strand, 31834013 - 31834052
Alignment:
Q  416 ttgggttgggtgattgggtggatatagttttacaaaatga 455  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  31834013 ttgggttgggtgattgggtggatatggttttaaaaaatga 31834052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 118 - 246
Target Start/End: Complemental strand, 1984544 - 1984414
Alignment:
Q  118 tgtttcctacttcactataaatgttgtttattagaatcaatttttattttgatttggatatatttactttgctttctgattaattttgtacgcaagttga 217  Q
    |||||||| ||| ||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||    
T  1984544 tgtttccttctttactataagtgttgtttattggaatcaaattttattttgatttggatatatttacgttgctttctgattcattttgtacacaagttga 1984445  T
Q  218 tag--cttggattgcattgtgccaaactaaa 246  Q
    | |  |||| |||||||||||||||||||||    
T  1984444 tggctcttgcattgcattgtgccaaactaaa 1984414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 24954904 - 24954857
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||    
T  24954904 gtgggttgggttgggtgattgggtggatatgattttaaaaaatgaaaa 24954857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 33438566 - 33438613
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  33438566 gtgggttgggttgggtgattgggttgatatggttttaaaaaatgaaaa 33438613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 40210091 - 40210138
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||| ||||||||||||||| |||||| ||||||||||    
T  40210091 gtgggttgggttggatgattgggtggatatggttttaaaaaatgaaaa 40210138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 455
Target Start/End: Complemental strand, 28363495 - 28363451
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatga 455  Q
    |||||| ||||||||||||||||||||||| |||||| |||||||    
T  28363495 gtgggtcgggttgggtgattgggtggatatggttttaaaaaatga 28363451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 455
Target Start/End: Complemental strand, 44959912 - 44959874
Alignment:
Q  417 tgggttgggtgattgggtggatatagttttacaaaatga 455  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  44959912 tgggttgggtgattgggtggatatggttttaaaaaatga 44959874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 1984376 - 1984335
Alignment:
Q  245 aaaggtaagcaacaatacattgaaataattcccttgagaaac 286  Q
    ||||| |||||| ||||||||||||||||||||||| |||||    
T  1984376 aaagggaagcaaaaatacattgaaataattcccttgtgaaac 1984335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 33365080 - 33365127
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  33365080 gtgggttgggttgggtgattgggtggatatggttttaaaaaatgaaaa 33365127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 232068 - 232112
Alignment:
Q  414 ggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||    
T  232068 ggttgggttgggtgattgggtggatatggttttaaaaaatgaaaa 232112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 708479 - 708523
Alignment:
Q  414 ggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||    
T  708479 ggttgggttgggtgattgggtggatatggttttaaaaaatgaaaa 708523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 745691 - 745735
Alignment:
Q  414 ggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||    
T  745691 ggttgggttgggtgattgggtggatatggttttaaaaaatgaaaa 745735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 869586 - 869630
Alignment:
Q  414 ggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||    
T  869586 ggttgggttgggtgattgggtggatatggttttaaaaaatgaaaa 869630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 31627631 - 31627678
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||| |||||||||||||||||||||||||  ||||| ||||||||||    
T  31627631 gtggattgggttgggtgattgggtggatatgattttaaaaaatgaaaa 31627678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 23927889 - 23927936
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  23927889 gtgggttgggttgggtgattgggtggatatggttttaaaaaatgaaaa 23927936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 412 - 458
Target Start/End: Complemental strand, 40484940 - 40484894
Alignment:
Q  412 tgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||    
T  40484940 tgggttgggttgggtgattgggtggatatggttttaaaaaatgaaaa 40484894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 16049335 - 16049288
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    ||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  16049335 gtgggttggattgggtgattgggtggatatggttttaaaaaatgaaaa 16049288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 35667293 - 35667340
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  35667293 gtgggttgggttgggtgattgggtggatatggttttaaaaaataaaaa 35667340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 9888735 - 9888778
Alignment:
Q  414 ggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||    
T  9888735 ggttgggttgggtgattgggtggatatggtttta-aaaatgaaaa 9888778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 455
Target Start/End: Complemental strand, 26363372 - 26363328
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatga 455  Q
    |||||||||||||||| ||||||||||||| |||||| |||||||    
T  26363372 gtgggttgggttgggtaattgggtggatatggttttaaaaaatga 26363328  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 452
Target Start/End: Original strand, 29289427 - 29289468
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaa 452  Q
    ||||||||||||||||||||||||| |||| |||||| ||||    
T  29289427 gtgggttgggttgggtgattgggtgaatatggttttaaaaaa 29289468  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 39085388 - 39085341
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  39085388 gtgggttgggttgggtgattgggtggatatggttttaaaaaatgaaaa 39085341  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 12026225 - 12026178
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||||||||||| ||||||| |||||| ||||||||||    
T  12026225 gtgggttgggttgggtgattggatggatatggttttaaaaaatgaaaa 12026178  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 4774486 - 4774439
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    ||||||||||||||||||||| | |||||| |||||| ||||||||||    
T  4774486 gtgggttgggttgggtgattgagcggatatggttttaaaaaatgaaaa 4774439  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 48433199 - 48433152
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||| |||||||||||||||  ||||| ||||||||||    
T  48433199 gtgggttgggttggatgattgggtggatatgattttaaaaaatgaaaa 48433152  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 455
Target Start/End: Original strand, 52497448 - 52497492
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatga 455  Q
    ||||||||| |||| ||||||||||||||| |||||| |||||||    
T  52497448 gtgggttggattggatgattgggtggatatcgttttaaaaaatga 52497492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 14795517 - 14795564
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  14795517 gtgggttgggttgggtgattgggtggatatggttttaaaaaatgaaaa 14795564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 19585078 - 19585031
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  19585078 gtgggttgggttgggtgattgggtggatatggttttaaaaaatgaaaa 19585031  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 31200596 - 31200549
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  31200596 gtgggttgggttgggtgattgggtggatatggttttaaaaaatgaaaa 31200549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 51251275 - 51251228
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  51251275 gtgggttgggttgggtgattgggtggatatggttttaaaaaatgaaaa 51251228  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 21968806 - 21968853
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||||||||||||||||||| |||| | ||||||||||    
T  21968806 gtgggttgggttgggtgattgggtggatatggtttgaaaaaatgaaaa 21968853  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 40709635 - 40709682
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||    
T  40709635 gtgggttgggttgggtgattgggtggatatgattttaaaaaatgaaaa 40709682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 50049890 - 50049937
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||    
T  50049890 gtgggttaggttgggtgattgggtggatatggttttaaaaaatgaaaa 50049937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 455
Target Start/End: Original strand, 8049413 - 8049456
Alignment:
Q  412 tgggttgggttgggtgattgggtggatatagttttacaaaatga 455  Q
    |||||| |||||||||||||||||||||| |||||| |||||||    
T  8049413 tgggttaggttgggtgattgggtggatatcgttttaaaaaatga 8049456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 8059094 - 8059141
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||| |||||||||||||||| |||| |||||| ||||||||||    
T  8059094 gtgggttgagttgggtgattgggtgaatatggttttaaaaaatgaaaa 8059141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 413 - 458
Target Start/End: Complemental strand, 34899825 - 34899780
Alignment:
Q  413 gggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||    
T  34899825 gggttgggttgggtgattgggtggatatggttttaaaaaatgaaaa 34899780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 8423252 - 8423299
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  8423252 gtgggttgggttgggtgattgggtggatatggttttaaaaaataaaaa 8423299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 22417106 - 22417059
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    ||||||||||||||||||||| |||||||| |||||| ||||||||||    
T  22417106 gtgggttgggttgggtgattgagtggatatggttttaaaaaatgaaaa 22417059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 30356918 - 30356965
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||||||    
T  30356918 gtgggttgggttgggtgattggggggatatggttttaaaaaatgaaaa 30356965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 440
Target Start/End: Original strand, 8371394 - 8371423
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatat 440  Q
    ||||||||||||||||||||||||||||||    
T  8371394 gtgggttgggttgggtgattgggtggatat 8371423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 458
Target Start/End: Complemental strand, 17475167 - 17475122
Alignment:
Q  413 gggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    ||||||| ||||||||||||||| |||| |||||| ||||||||||    
T  17475167 gggttggattgggtgattgggtgaatatggttttaaaaaatgaaaa 17475122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 490
Target Start/End: Original strand, 7940552 - 7940584
Alignment:
Q  458 agagatttacttttcccaccctacgcctttcct 490  Q
    ||||||||||||||||||||||| |||||||||    
T  7940552 agagatttacttttcccaccctatgcctttcct 7940584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 397497 - 397450
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    ||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  397497 gtgggttggattgggtgattgggtggatatggttttaaaaaatgaaaa 397450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 890323 - 890370
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||| ||||||||||||||| |||||| ||||||||||    
T  890323 gtgggttgggttggatgattgggtggatatggttttaaaaaatgaaaa 890370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 32951239 - 32951286
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||||||||||||||||||| ||||||| |||||| ||||||||||    
T  32951239 gtgggttgggttgggtgattggatggatatggttttaaaaaatgaaaa 32951286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 455
Target Start/End: Original strand, 43342456 - 43342494
Alignment:
Q  417 tgggttgggtgattgggtggatatagttttacaaaatga 455  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  43342456 tgggttgggtgattgggtggatatagttttaaaaaatga 43342494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 458
Target Start/End: Complemental strand, 23723488 - 23723445
Alignment:
Q  414 ggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||    
T  23723488 ggttgggttgggtgattgggtggatatggtttta-aaaatgaaaa 23723445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 27925242 - 27925286
Alignment:
Q  414 ggttgggttgggtgattgggtggatatagttttacaaaatgaaaa 458  Q
    |||||| |||||||||||||||||||| |||||| ||||||||||    
T  27925242 ggttggattgggtgattgggtggatatggttttaaaaaatgaaaa 27925286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 455
Target Start/End: Complemental strand, 28044174 - 28044130
Alignment:
Q  411 gtgggttgggttgggtgattgggtggatatagttttacaaaatga 455  Q
    ||||||||||||||||||||||||| |||| |||||  |||||||    
T  28044174 gtgggttgggttgggtgattgggtgaatatggtttttaaaaatga 28044130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 8372 - 8413
Alignment:
Q  163 attttgatttggatatatttactttgctttctgattaatttt 204  Q
    ||||||||||||||| ||||||||||||||| |||| |||||    
T  8372 attttgatttggatacatttactttgctttccgattcatttt 8413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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