View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17997_low_6 (Length: 426)
Name: NF17997_low_6
Description: NF17997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17997_low_6 |
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| [»] scaffold0036 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 152 - 366
Target Start/End: Original strand, 13642606 - 13642820
Alignment:
| Q |
152 |
aattgaatataatccaattaaacgaggtaaaggatgacccaagtaaacattataagaaactattttatgatttacagtttttgcaccgctacccaaattg |
251 |
Q |
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| T |
13642606 |
aattgaatataatccaattaaacgaggtaaaggatgacccaagtaaacattataagaaactattttatgatttacaatttttgcattgctacccaaattg |
13642705 |
T |
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| Q |
252 |
tctcaattaagacgatcattatctgtgttttcggtgagcaattgagtagcaattttatagttgacaaactttttaacaattcttgatggtttacaatttt |
351 |
Q |
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| T |
13642706 |
tctcaattaagacgatcattatctgtgttttcggtgagcaattgagtagcaattttatagttgacaaactttttaacaattcttgatggtttacaatttt |
13642805 |
T |
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| Q |
352 |
atggcttgaaaacat |
366 |
Q |
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| T |
13642806 |
atggcttgaaaacat |
13642820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 13642394 - 13642519
Alignment:
| Q |
1 |
tttagtcatgttaacttacctttgggtcgattaatactcttcttgttcaatttctgaaaaaattgaatcataatattctagattgggtatgaagatggag |
100 |
Q |
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| T |
13642394 |
tttagtcatgttaatttacctttgggtcgattaatactctt---gttcaatttctgaaaaaatagaatcataatattctagattgggtatgaagatggag |
13642490 |
T |
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| Q |
101 |
cctatttcgatgtgaaaaataattacata |
129 |
Q |
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| T |
13642491 |
cctatttcgatgtgaaaaataattacata |
13642519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 426
Target Start/End: Original strand, 13643229 - 13643286
Alignment:
| Q |
369 |
aattatgatgtttgctaaaatggaccattgtccacaacagatcacatttttcattcaa |
426 |
Q |
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| T |
13643229 |
aattatgatgtttgctaaaatgaaccattgtccacaacatatcacatttttcattcaa |
13643286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 426
Target Start/End: Original strand, 13646093 - 13646135
Alignment:
| Q |
384 |
taaaatggaccattgtccacaacagatcacatttttcattcaa |
426 |
Q |
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| T |
13646093 |
taaaatggaccattgtccacaccagatcacatttttcattcaa |
13646135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 426
Target Start/End: Original strand, 13638597 - 13638641
Alignment:
| Q |
383 |
ctaaaatggaccattgtc-cacaacagatcacatttttcattcaa |
426 |
Q |
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| T |
13638597 |
ctaaaatggaccattgtgtcacaacatatcacatttttcattcaa |
13638641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 55764 - 55667
Alignment:
| Q |
20 |
ctttgggtcgattaatactcttcttgttcaatttctgaaaaaattgaatcataatattctagatt-gggtatgaagatggagcctatttcgatgtgaaa |
117 |
Q |
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| T |
55764 |
ctttgggttgattgattttcttcttattccatttgtgaaaaaat-gaataataatattctagatttggggatggagatggagcctattaagatgtgaaa |
55667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 426
Target Start/End: Original strand, 31910338 - 31910383
Alignment:
| Q |
381 |
tgctaaaatggaccattgtccacaacagatcacatttttcattcaa |
426 |
Q |
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| T |
31910338 |
tgctaaaatggaccgtggtccgcaacagatcacatttttcattcaa |
31910383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 426
Target Start/End: Original strand, 31903004 - 31903047
Alignment:
| Q |
383 |
ctaaaatggaccattgtccacaacagatcacatttttcattcaa |
426 |
Q |
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|||||||||||||| |||||||||||||| |||| ||||||||| |
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| T |
31903004 |
ctaaaatggaccatggtccacaacagatcgcattattcattcaa |
31903047 |
T |
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