View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17997_low_8 (Length: 323)
Name: NF17997_low_8
Description: NF17997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17997_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 22807543 - 22807250
Alignment:
| Q |
19 |
actagattgtgcatcatttgtgatagaacatgaaaccttgtgagtttttgagcttccaacatttgttgtttcttgtgtgaattcactcatactgttagtt |
118 |
Q |
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| T |
22807543 |
actagattgtgcatcatttgtgataga-catgaaaccttgtgagtttttgagcttccaacatttgttgtttcttgtgtgaattcactcatactgttagtt |
22807445 |
T |
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| Q |
119 |
acttccaggatttgtcttgactcttgaagcacttgttcacatgcatgtacagaaaggatctaggccatttttcttttataacctactttcagcaaaataa |
218 |
Q |
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| T |
22807444 |
acttccagggtttgccttgactcttgaaacacttgttcacatgcatgtacggaaatgatatacgccatctttctttcataacctacttttagccaaataa |
22807345 |
T |
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| Q |
219 |
gcttaccttgatataattattcctttgttaaacccctttgagatatttatcccattctttgtttattacctcattacatgccaattaagcctttg |
313 |
Q |
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| T |
22807344 |
gcctaccctgatattattattcctttgttaagcccctttaagctatttatcccattctttgtatattacctaattacaagccaattaagcctttg |
22807250 |
T |
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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 255
Target Start/End: Complemental strand, 33320426 - 33320255
Alignment:
| Q |
84 |
ttgtttcttgtgtgaattcactcatactgttagttacttccaggatttgtcttgactcttgaagcacttgttcacatgcatgtacagaaaggatctaggc |
183 |
Q |
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|||||| | ||||| |||| |||||| |||||||||||| | | ||| ||| | |||| |||||||| |||||||||||||||| ||| ||| ||||| |
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| T |
33320426 |
ttgtttatggtgtggattctctcatattgttagttactttcgaggttttccttaagtcttaaagcactttttcacatgcatgtacaaaaatgatttaggc |
33320327 |
T |
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| Q |
184 |
catttttcttttataacctactttcagcaaaataagcttaccttgatataattattcctttgttaaacccct |
255 |
Q |
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| T |
33320326 |
catctttctttcataacctacttttagccaaatcagcctaccttgatgtaattatcccttagttaagcccct |
33320255 |
T |
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