View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17998_high_10 (Length: 439)
Name: NF17998_high_10
Description: NF17998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17998_high_10 |
 | |
|
| [»] scaffold0394 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 423
Target Start/End: Complemental strand, 52174431 - 52174022
Alignment:
| Q |
14 |
ttctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaattttt |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| || |||||||||||||| |||||||| |||||| |
|
|
| T |
52174431 |
ttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccgaaatcagatattttt |
52174332 |
T |
|
| Q |
114 |
ggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaa |
213 |
Q |
| |
|
|| ||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52174331 |
gggcaaaagtcttcatccaaaataatgttttgaggtttgatatcaagatgcaaaatccttgaactacatccttgatgcaagtactctagtcctttagcaa |
52174232 |
T |
|
| Q |
214 |
tgccaagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcat |
313 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
52174231 |
tgccaattgcaatttggaacaaagtgttccaattaaaatcacaaacagcttcagaaaatccacttttatagatgaactgatccaatgatccttggcgcat |
52174132 |
T |
|
| Q |
314 |
gaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcgtgtgtgatgttctactaatgctagcaacttcattt |
413 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
52174131 |
gaattcatatattagtgctcttttgttcacctcataacaatagcctaaaagtgacacaatgttcacgtgtgatgttctactaatgctagcaacttcattt |
52174032 |
T |
|
| Q |
414 |
atgaattctt |
423 |
Q |
| |
|
|||||||||| |
|
|
| T |
52174031 |
atgaattctt |
52174022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 49710886 - 49710780
Alignment:
| Q |
15 |
tctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaatttttg |
114 |
Q |
| |
|
|||||||| ||||||||| ||||| |||| ||||| |||||| ||||| || || || ||| |||| ||||| || ||||||||||| |||||||||| |
|
|
| T |
49710886 |
tctggagcaatatatcctggtgttccccttgcaccaaatattgatacaatgctttcttttcttagacatattttagcaagtccaaaatctgaaatttttg |
49710787 |
T |
|
| Q |
115 |
gacaaaa |
121 |
Q |
| |
|
||||||| |
|
|
| T |
49710786 |
gacaaaa |
49710780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 49683276 - 49683173
Alignment:
| Q |
15 |
tctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaatttttg |
114 |
Q |
| |
|
|||||||| ||||||||| || || |||| ||||| |||||| ||||| || || || ||| |||| ||||| || ||||||||||| |||||||||| |
|
|
| T |
49683276 |
tctggagcaatatatcctggtgtcccccttgcaccaaatattgatacaatgctttcttttcttggacatattttagcaagtccaaaatctgaaatttttg |
49683177 |
T |
|
| Q |
115 |
gaca |
118 |
Q |
| |
|
|||| |
|
|
| T |
49683176 |
gaca |
49683173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 423
Target Start/End: Original strand, 31576108 - 31576517
Alignment:
| Q |
14 |
ttctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaattttt |
113 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| || | |||||| ||||||||||||||| |||| || ||||| ||||||||||||||||| |||||| |
|
|
| T |
31576108 |
ttctggtgccatatatcctattgttcctcttgcccctaatattgacacaatactatccttcttttggcatattttcgctagtccaaaatcagagattttt |
31576207 |
T |
|
| Q |
114 |
ggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaa |
213 |
Q |
| |
|
|| ||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
31576208 |
gggcaaaaatcatcatccaaaagaatgttttgaggttttatatcaagatgcagaatccttgaactgcatccttggtgcaagtactctagacctctagcaa |
31576307 |
T |
|
| Q |
214 |
tgccaagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcat |
313 |
Q |
| |
|
|||||| || |||||||| ||||||||||||| ||||||||||| ||| | ||||||| ||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
31576308 |
tgccaattgctatttggaacaaagtgttccaatcaaaatcacaaatagcgttaggaaattcacttttatagatgaacttatccaatgatccattgggcat |
31576407 |
T |
|
| Q |
314 |
gaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcgtgtgtgatgttctactaatgctagcaacttcattt |
413 |
Q |
| |
|
||| |||||||||||||||||||||| | ||||||||||| |||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
31576408 |
gaattcatatattagtgctcttttgtccacctcataacaaaagcctaaaagggacacaatgttcatgtgtgatgttcgactaatgctagcaacttcattt |
31576507 |
T |
|
| Q |
414 |
atgaattctt |
423 |
Q |
| |
|
|||||||||| |
|
|
| T |
31576508 |
atgaattctt |
31576517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 423
Target Start/End: Original strand, 31595165 - 31595574
Alignment:
| Q |
14 |
ttctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaattttt |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || ||||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
31595165 |
ttctggcgccatatatcctatagttcctcttgtccccggtattgacacaatactatcattcatttgacatatttttgctagtccaaaatcagagattttt |
31595264 |
T |
|
| Q |
114 |
ggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaa |
213 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31595265 |
gggcaaaagttttcgtccaaaagaatgttttgaggtttgatatcaagatgcagtatccttgaactacatccttgatgcaagtactctaaacctctagcaa |
31595364 |
T |
|
| Q |
214 |
tgccaagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcat |
313 |
Q |
| |
|
|||| | | ||||||||| ||||||||| ||| ||||||||||||||| | |||||||||||||||||||||||| || || | |||||||| |||||| |
|
|
| T |
31595365 |
tgccgatagcaatttggaacaaagtgttcgaatcaaaatcacaaacagcgtcaggaaatccacttttatagatgaatttgtctagtgatcctttgggcat |
31595464 |
T |
|
| Q |
314 |
gaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcgtgtgtgatgttctactaatgctagcaacttcattt |
413 |
Q |
| |
|
|||||||||||||||||||||||| || |||| |||||||| |||| ||| |||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
31595465 |
gaactcatatattagtgctcttttatttgcctcgtaacaataacctaaaagtgacacaatgttcatgtgtgatgttctactgatgctagcaacttcattt |
31595564 |
T |
|
| Q |
414 |
atgaattctt |
423 |
Q |
| |
|
||||| |||| |
|
|
| T |
31595565 |
atgaactctt |
31595574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 423
Target Start/End: Original strand, 31604774 - 31605183
Alignment:
| Q |
14 |
ttctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaattttt |
113 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| || | |||||| ||||||||||||||| |||| || ||||| ||||||||||||||||| |||||| |
|
|
| T |
31604774 |
ttctggtgccatatatcctattgttcctcttgcccctaatattgacacaatactatccttcttttggcatattttcgctagtccaaaatcagagattttt |
31604873 |
T |
|
| Q |
114 |
ggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaa |
213 |
Q |
| |
|
|| ||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
31604874 |
gggcaaaaatcatcatccaaaagaatgttttgaggttttatatcaagatgcagaatccttgaactgcatccttggtgcaagtactctagacctctagcaa |
31604973 |
T |
|
| Q |
214 |
tgccaagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcat |
313 |
Q |
| |
|
|||||| || |||||||| ||||||||||||| ||||||||||| ||| | ||||||| ||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
31604974 |
tgccaattgctatttggaacaaagtgttccaatcaaaatcacaaatagcgttaggaaattcacttttatagatgaacttatccaatgatccattgggcat |
31605073 |
T |
|
| Q |
314 |
gaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcgtgtgtgatgttctactaatgctagcaacttcattt |
413 |
Q |
| |
|
||| |||||||||||||||||||||| | ||||||||||| |||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
31605074 |
gaattcatatattagtgctcttttgtccacctcataacaaaagcctaaaagggacacaatgttcatgtgtgatgttcgactaatgctagcaacttcattt |
31605173 |
T |
|
| Q |
414 |
atgaattctt |
423 |
Q |
| |
|
|||||||||| |
|
|
| T |
31605174 |
atgaattctt |
31605183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 423
Target Start/End: Original strand, 31618378 - 31618787
Alignment:
| Q |
14 |
ttctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaattttt |
113 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| || | |||||| |||||||||||||||||||| || ||||| |||||||||||||| || |||||| |
|
|
| T |
31618378 |
ttctggtgccatgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagattttt |
31618477 |
T |
|
| Q |
114 |
ggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaa |
213 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
31618478 |
ggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgcaagtactctagacctttagcaa |
31618577 |
T |
|
| Q |
214 |
tgccaagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcat |
313 |
Q |
| |
|
|||||| || |||| | || ||||||||||||| ||||||||||| || | ||||||| ||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
31618578 |
tgccaattgcaattcgaaacaaagtgttccaatcaaaatcacaaatggcattaggaaattcacttttgtagatgaacttatccaatgatcctttgggcat |
31618677 |
T |
|
| Q |
314 |
gaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcgtgtgtgatgttctactaatgctagcaacttcattt |
413 |
Q |
| |
|
||| ||||||||||| |||||||||||| | || |||||||| |||| ||| |||||||||||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
31618678 |
gaattcatatattagcgctcttttgttctcttcgtaacaatatcctaaaagcgacacaatgttcatatgtgatgtcctactaatgctagcaacttcattt |
31618777 |
T |
|
| Q |
414 |
atgaattctt |
423 |
Q |
| |
|
|||||||||| |
|
|
| T |
31618778 |
atgaattctt |
31618787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 423
Target Start/End: Original strand, 31608368 - 31608777
Alignment:
| Q |
14 |
ttctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaattttt |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| || | |||||| |||||||| |||||||||||||| ||||| || |||||||||||||| |||||| |
|
|
| T |
31608368 |
ttctggcgccatatatcctatagttcctcgtgtccccaatattgacacaatactgtccttcctttgacatattttagcaagtccaaaatcagatattttt |
31608467 |
T |
|
| Q |
114 |
ggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaa |
213 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
31608468 |
ggacaaaagtcttcatccaaaagaatgttttgaggtttgatatcaagatgtagtatccttgaactacatccttgatgcaagtactcgagacctctagcaa |
31608567 |
T |
|
| Q |
214 |
tgccaagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcat |
313 |
Q |
| |
|
|||| | | || |||||| ||||||||||||| ||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||||| |||||| |
|
|
| T |
31608568 |
tgccgatagcaacttggaacaaagtgttccaatcaaaatcacaaacagcgtcaggaaatccactcttatagatgaacttatccagggatcctttgggcat |
31608667 |
T |
|
| Q |
314 |
gaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcgtgtgtgatgttctactaatgctagcaacttcattt |
413 |
Q |
| |
|
| | ||||||||||| |||||||| ||| ||||||||||| | |||| || |||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
31608668 |
gtattcatatattagcgctcttttattcacctcataacaaaaacctaagagtgacacaatgttcaggtgtgatgttctactgatgctagcaacttcattt |
31608767 |
T |
|
| Q |
414 |
atgaattctt |
423 |
Q |
| |
|
||||| |||| |
|
|
| T |
31608768 |
atgaactctt |
31608777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 423
Target Start/End: Original strand, 31614649 - 31615051
Alignment:
| Q |
14 |
ttctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaattttt |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||| |||| || ||||| ||||||||||||||||| |||||| |
|
|
| T |
31614649 |
ttctggtgccatatatcctatagttcctcttgtacctaatattgacacaatactatccttcttttggcatattttcgctagtccaaaatcagagattttt |
31614748 |
T |
|
| Q |
114 |
ggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaa |
213 |
Q |
| |
|
|| ||||| ||||| |||||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||| |||||||| | |
|
|
| T |
31614749 |
gggcaaaaatcttcatccaaaagaatgttttgaggtttggtatcaagatacagaatccttgagcta-------gatgcaagtactctagacctctagcga |
31614841 |
T |
|
| Q |
214 |
tgccaagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcat |
313 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||| ||||||||||| ||| | ||||||| ||||||| |||||||| ||||||||||||||| || ||| |
|
|
| T |
31614842 |
tgccaattgcaatttggaacaaagtgttccaattaaaatcacaaatagcattaggaaattcacttttgtagatgaaactatccaatgatcctttggacat |
31614941 |
T |
|
| Q |
314 |
gaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcgtgtgtgatgttctactaatgctagcaacttcattt |
413 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||| |||||| |||||| ||||||||| ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
31614942 |
gaattcatatattagtgctcttttgttcacctcataacaaaagcctaaaagggatacaatgttcatgtgtaatgttcgactaatgctagcaacttcattt |
31615041 |
T |
|
| Q |
414 |
atgaattctt |
423 |
Q |
| |
|
|||||||||| |
|
|
| T |
31615042 |
atgaattctt |
31615051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 14 - 423
Target Start/End: Original strand, 31585518 - 31585927
Alignment:
| Q |
14 |
ttctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaattttt |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| || || ||||| ||| ||||||||||| || | || ||||||||||||||||||||||| |||||| |
|
|
| T |
31585518 |
ttctggtgccatatatcctatagttcctcttgcccctagcattgacacagtactatccttctttcggcatatttttgctagtccaaaatcagatattttt |
31585617 |
T |
|
| Q |
114 |
ggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaa |
213 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
31585618 |
ggacaaaaatcttcatccaaaagaatgttttggggtttgatatcaagatgcagaatcctcgaactacatccttgatgcaaatactctaaacctctagcaa |
31585717 |
T |
|
| Q |
214 |
tgccaagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcat |
313 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||| ||||||| | | ||| | ||||||| ||| ||||||| |||||| |||||||||||| || ||| |
|
|
| T |
31585718 |
tgccaactgcaatttggaacaaagtgttccaatcaaaatcatatatagcattaggaaattggcttctatagataaacttacccaatgatcctttggacat |
31585817 |
T |
|
| Q |
314 |
gaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcgtgtgtgatgttctactaatgctagcaacttcattt |
413 |
Q |
| |
|
||| |||||||| | ||||||||||||| ||||||| ||| |||||| ||| || |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
31585818 |
gaattcatatatcaatgctcttttgttcacctcatagcaaaagcctaaaagtgatacaatgttgatgtgtgatgttctactaatgctagaaacttcattt |
31585917 |
T |
|
| Q |
414 |
atgaattctt |
423 |
Q |
| |
|
|||||||||| |
|
|
| T |
31585918 |
atgaattctt |
31585927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 14 - 423
Target Start/End: Original strand, 31541130 - 31541536
Alignment:
| Q |
14 |
ttctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaattttt |
113 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||||||| || ||||||||||| |||||||| || | ||| ||||||||||||||||| ||||| |
|
|
| T |
31541130 |
ttctggtgctatatatcctatagttcctcttgtgccaagtaaagacacaatactatcattcctttggcatactttagctagtccaaaatcagagattttg |
31541229 |
T |
|
| Q |
114 |
ggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaa |
213 |
Q |
| |
|
|| ||||| | ||| ||||||||||||||||| ||||||||||||||||||| ||| |||||| ||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
31541230 |
gggcaaaaattttcatccaaaagaatgttttgtggtttgatatcaagatgcaaaattcttgaaatacatccttgatgcaagtattctagtcctcgagcaa |
31541329 |
T |
|
| Q |
214 |
tgccaagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcat |
313 |
Q |
| |
|
| || | || ||||||| | || || ||||||| ||| ||||| ||| | | |||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
31541330 |
ttccgattgcaatttggtacaatgtcttccaatccaaactacaaatagcatcatgaaatccacttttaagaatgaacttatccaatgatcctttgggcaa |
31541429 |
T |
|
| Q |
314 |
gaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcgtgtgtgatgttctactaatgctagcaacttcattt |
413 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| | || | ||| || ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31541430 |
gaactcatatattagtgctcttttgtt---ctcataacaaaatcccaaaagtgagacaatgttcacatgtgatgttctactaatgctagcaacttcattt |
31541526 |
T |
|
| Q |
414 |
atgaattctt |
423 |
Q |
| |
|
||||| |||| |
|
|
| T |
31541527 |
atgaaatctt |
31541536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 31572956 - 31572555
Alignment:
| Q |
18 |
ggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaatttttggac |
117 |
Q |
| |
|
||||| || |||||||||||||| ||||| |||||||| || |||||||||||||||||||| || |||| ||||||||||||||||| |||||||| | |
|
|
| T |
31572956 |
ggagctatgtatcctatagttccccttgtgccaagtatggacacaatactatccttcctttggcatatttgagctagtccaaaatcagagatttttgggc |
31572857 |
T |
|
| Q |
118 |
aaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaatgcc |
217 |
Q |
| |
|
|||| ||||| ||||||||||||||||| ||||| ||||||||||||| |||||||||| |||||||||| |||||||| || ||||||||||| ||||| |
|
|
| T |
31572856 |
aaaaatcttcatccaaaagaatgttttg-ggttttatatcaagatgcaaaatccttgaaatacatccttgttgcaagtattcgagtcctctagctatgcc |
31572758 |
T |
|
| Q |
218 |
aagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcatgaac |
317 |
Q |
| |
|
| || |||| || | || |||||||||| |||| ||||| || |||||||||||||||| |||||||||| || | ||| || | |||||||| |
|
|
| T |
31572757 |
tattgcaattcggtacaacgtgttccaatccaaattacaaagtgcactaggaaatccacttttaaagatgaacttgtctagtgaaccatttggcatgaat |
31572658 |
T |
|
| Q |
318 |
tcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcgtgtgtgatgttctactaatgctagcaacttcatttatga |
417 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | || | ||| || ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31572657 |
tcatatattagtgctcttttgtt---ctcataacagaaacccaaaagtgagacaatgttcacatgtgatgttctactaatgctagcaacttcatttatga |
31572561 |
T |
|
| Q |
418 |
attctt |
423 |
Q |
| |
|
|||||| |
|
|
| T |
31572560 |
attctt |
31572555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 30 - 423
Target Start/End: Complemental strand, 31439121 - 31438728
Alignment:
| Q |
30 |
cctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaatttttggacaaaagtcttcgt |
129 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||| || ||| ||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||| | |
|
|
| T |
31439121 |
cctatagttcctcttgtgccaagtagggaaacaacactctctttcttttgacatattttagctagaccaaaatcagatatttttggacaaaaatcttcat |
31439022 |
T |
|
| Q |
130 |
ccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaatgccaagtgtaatttg |
229 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||| |||||| |||| |||||||| ||||||||||||||||||||||||| || || ||| || |
|
|
| T |
31439021 |
ctaaaagaatgttttgaggtttgatatcaagatgcaaaattcttgaaatacaaccttgatgtaagtactctagtcctctagcaatgctaattgcaatatg |
31438922 |
T |
|
| Q |
230 |
gaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcatgaactcatatattagt |
329 |
Q |
| |
|
||| | |||||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| ||||| || | || |||||| |||||||| | | |
|
|
| T |
31438921 |
gaacattgtgttccaatccaaatcacaaatagcatttggaaatccacttttatatatgaacttatctaatgacccattggacatgaattcatatatcaat |
31438822 |
T |
|
| Q |
330 |
gctcttttgttcccctcataacaatagcctacaagggacacaatgttcgtgtgtgatgttctactaatgctagcaacttcatttatgaattctt |
423 |
Q |
| |
|
|| ||||||||| ||||||||| | || | ||| || ||||||||| ||||||||| |||| ||||| |||||||||||||| ||||||| |
|
|
| T |
31438821 |
gcacttttgttcttttcataacaaaaacccaaaagtgagacaatgttcacatgtgatgttttacttatgcttgcaacttcatttataaattctt |
31438728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 136 - 423
Target Start/End: Original strand, 31532595 - 31532879
Alignment:
| Q |
136 |
gaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaatgccaagtgtaatttggaaaaa |
235 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||| ||||||||| | || ||||||| | || |
|
|
| T |
31532595 |
gaatgttttgtggtttgatatcaagatgcaaaatccttgaattacatccttgatgcaagtattctagtccttgagcaatgccgattgcaatttggtacaa |
31532694 |
T |
|
| Q |
236 |
agtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcatgaactcatatattagtgctctt |
335 |
Q |
| |
|
| |||||||| ||| ||||| ||| | ||| || |||||||| |||||| ||||| ||||||||| || |||||| |||||||||||||||||| |
|
|
| T |
31532695 |
tgcgttccaatctaaactacaaatagcatcaggcaacccacttttgaggatgaatttatctaatgatcctctggacatgaattcatatattagtgctctt |
31532794 |
T |
|
| Q |
336 |
ttgttcccctcataacaatagcctacaagggacacaatgttcgtgtgtgatgttctactaatgctagcaacttcatttatgaattctt |
423 |
Q |
| |
|
||||| |||||| ||| | || | ||| || || |||||| |||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
31532795 |
ttgtt---ctcatagcaaaaacccaaaagtgaaacgatgttcacatgtgatgttctactaatgcttgcaacttcatttgtgaattctt |
31532879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 27 - 183
Target Start/End: Complemental strand, 33305256 - 33305100
Alignment:
| Q |
27 |
tatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaatttttggacaaaagtctt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||| |||||||||||||| || |||||||| ||||| |||| |
|
|
| T |
33305256 |
tatcctatagttcctcttgtaccaagtatggatacaatgctatccttcctttgacatatttgagctagtccaaaatctgagatttttgggcaaaaatctt |
33305157 |
T |
|
| Q |
127 |
cgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatc |
183 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||| |||||||||| |||||| |
|
|
| T |
33305156 |
aatccaaaagaatgttttggggtttgacatcaagatgcaaaatccttgaaatacatc |
33305100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 237 - 423
Target Start/End: Complemental strand, 33305068 - 33304880
Alignment:
| Q |
237 |
gtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcatgaactcatatattagtgctcttt |
336 |
Q |
| |
|
|||||||||| |||||||||| ||| | |||| |||||||| ||| ||||||||||||||||||||||| ||||||||| |||||||| || ||||||| |
|
|
| T |
33305068 |
gtgttccaatccaaatcacaaatagcatcaggagatccacttatatggatgaacttatccaatgatcctttgggcatgaattcatatatcagagctcttt |
33304969 |
T |
|
| Q |
337 |
tgttcccctcataacaatagcctacaagggacacaatgttc----gtg-tgtgatgttctactaatgctagcaacttcatttatgaattctt |
423 |
Q |
| |
|
|||| |||||||||| | || | ||| || ||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33304968 |
tgtt---ctcataacaaaaacccaaaagtgagacaatgttcacatgtgacgtgacgttctactaatgctagcaacttcatttataaattctt |
33304880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 21898334 - 21898213
Alignment:
| Q |
84 |
atttttgctagtccaaaatcagaaatttttggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatc |
183 |
Q |
| |
|
||||| || ||||||||||||| |||||||| ||||| || || |||| |||||||| || || |||||||| ||||||| |||||| ||| ||||| |
|
|
| T |
21898334 |
attttcgccagtccaaaatcagcgatttttgggcaaaaatcatcatccagcagaatgttgtggggcttgatatccagatgcacaatcctcgaagcacatc |
21898235 |
T |
|
| Q |
184 |
cttgatgcaagtactctagtcc |
205 |
Q |
| |
|
||||||||||||| || ||||| |
|
|
| T |
21898234 |
cttgatgcaagtagtccagtcc |
21898213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 30 - 423
Target Start/End: Complemental strand, 15063468 - 15063075
Alignment:
| Q |
30 |
cctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaatttttggacaaaagtcttcgt |
129 |
Q |
| |
|
||||||||||||||||| ||||| || || |||| ||| || ||| ||||||| ||||| || || ||||||||||| |||||||| ||||| ||||| | |
|
|
| T |
15063468 |
cctatagttcctcttgtcccaagcatggacacaacactctctttcttttgacatattttagcaagaccaaaatcagatatttttgggcaaaaatcttcat |
15063369 |
T |
|
| Q |
130 |
ccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaatgccaagtgtaatttg |
229 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||| |||||| |||| |||||||| || |||||||| |||| ||||||||||| | ||||| |
|
|
| T |
15063368 |
ctaaaagaatgttttgaggtttgatatcaagatgcaaaattcttgaaatacaaccttgatgtaaatactctagacctcgagcaatgccaattacgatttg |
15063269 |
T |
|
| Q |
230 |
gaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcatgaactcatatattagt |
329 |
Q |
| |
|
||| || |||||||||| |||||||||| ||| | |||||||||||||| || ||||||||||| |||||||| | || |||||| |||||||| | | |
|
|
| T |
15063268 |
gaataatgtgttccaatccaaatcacaaatagcatttggaaatccacttttgtatatgaacttatctaatgatccattggacatgaattcatatatcaat |
15063169 |
T |
|
| Q |
330 |
gctcttttgttcccctcataacaatagcctacaagggacacaatgttcgtgtgtgatgttctactaatgctagcaacttcatttatgaattctt |
423 |
Q |
| |
|
|||||||||||| |||||||||| | || | ||| || |||| |||| | ||||||||| | | ||||| |||||||||||||| ||||||| |
|
|
| T |
15063168 |
gctcttttgttcttctcataacaaaaacccaaaagtgaaacaacgttcatatgtgatgtttttgttatgcttgcaacttcatttataaattctt |
15063075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 159
Target Start/End: Original strand, 29083976 - 29084098
Alignment:
| Q |
38 |
tcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatc--agaaatttttggacaaaagtcttcgtccaaaa |
135 |
Q |
| |
|
|||| |||| |||||||| || |||||||||| ||| |||||| ||||| |||||||||||||| ||| ||||||| ||||| || || ||||||| |
|
|
| T |
29083976 |
tcctattgtgccaagtatagacacaatactatgattctcttgacatattttagctagtccaaaatcttagatttttttgg-caaaaatcgtcatccaaaa |
29084074 |
T |
|
| Q |
136 |
gaatgttttgaggtttgatatcaa |
159 |
Q |
| |
|
|||||||||| ||||||||||||| |
|
|
| T |
29084075 |
gaatgttttggggtttgatatcaa |
29084098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 2066 - 2177
Alignment:
| Q |
30 |
cctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaatttttggacaaaagtcttcgt |
129 |
Q |
| |
|
||||||||||||||||| ||||| || || |||| ||| || ||| ||||||| ||||| || || ||||||||||| |||||||| ||||| ||||| | |
|
|
| T |
2066 |
cctatagttcctcttgtcccaagcatggacacaacactctctttcttttgacatattttagcaagaccaaaatcagatatttttgggcaaaaatcttcat |
2165 |
T |
|
| Q |
130 |
ccaaaagaatgt |
141 |
Q |
| |
|
| |||||||||| |
|
|
| T |
2166 |
ctaaaagaatgt |
2177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 31189590 - 31189709
Alignment:
| Q |
86 |
ttttgctagtccaaaatcagaaatttttggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatcct |
185 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| || | || || ||||||||||| || ||||| || || | ||| | ||| |||| |||||||| |
|
|
| T |
31189590 |
ttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggtacatcct |
31189689 |
T |
|
| Q |
186 |
tgatgcaagtactctagtcc |
205 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
31189690 |
ctatgcaagtactctagtcc |
31189709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 31145532 - 31145597
Alignment:
| Q |
86 |
ttttgctagtccaaaatcagaaatttttggacaaaagtcttcgtccaaaagaatgttttgaggttt |
151 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||| |||| ||| || ||||||||||| || ||||| |
|
|
| T |
31145532 |
ttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggttt |
31145597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 31171845 - 31171910
Alignment:
| Q |
86 |
ttttgctagtccaaaatcagaaatttttggacaaaagtcttcgtccaaaagaatgttttgaggttt |
151 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||| |||| ||| || ||||||||||| || ||||| |
|
|
| T |
31171845 |
ttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggttt |
31171910 |
T |
|
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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 31201383 - 31201432
Alignment:
| Q |
72 |
ttcctttgacaaatttttgctagtccaaaatcagaaatttttggacaaaa |
121 |
Q |
| |
|
|||||| |||||| |||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
31201383 |
ttccttggacaaagttttgcaagtccaaaatctgaaatctttggacaaaa |
31201432 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 30955308 - 30955236
Alignment:
| Q |
87 |
tttgctagtccaaaatcagaaatttttggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaa |
159 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||| || | ||| || ||||||||||| || ||||| ||||||| |
|
|
| T |
30955308 |
tttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaa |
30955236 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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