View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17998_high_11 (Length: 434)
Name: NF17998_high_11
Description: NF17998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17998_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 10 - 418
Target Start/End: Complemental strand, 19568143 - 19567735
Alignment:
| Q |
10 |
attattctcatgattctctaggcattattttaaatggaagaaaataaagcatcttcaatctgtagtgacacacagtgataatagtaacaaaagcaacatt |
109 |
Q |
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| T |
19568143 |
attattctcatgattctctagccattatttaaattggaagaaaagaaagcatcttcaatctgtagtgacacacagtgataatagtaacaaaagcaacatt |
19568044 |
T |
|
| Q |
110 |
ggtcacattacaaccttagagaaaacagataagtgtcacttcatatgttacgtgtcacattcatgcaatccttacttttgatatgaaacaatagtaatct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19568043 |
ggtcacattacaaccttagagaaaacagataagtgtcacttcatatgttacgtgtcacattcatgcaatccttacttttgatatgaaacaatagtaatct |
19567944 |
T |
|
| Q |
210 |
tgtgaaaccatgtggtataccactctataaatatgtagaaaatcagcttatagctcaagcatctaaatatccttcaaaaacattaaagggggtgtagtaa |
309 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19567943 |
tgtgaaaccatgtggtatacaactctataaatatgtagaaaatcagcttatacctcaagcatctaaatatccttcaaaaacattaaagggggtgtagtga |
19567844 |
T |
|
| Q |
310 |
gtaagttaccaagtgttaagacttaagagtcaatatgggagcaaaaaagtcatcttctaactcatttacaagcttattcaagtgttgtttttcaagtaga |
409 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19567843 |
gtaagttaccaagtgttaagacttaagactcaatatgggagcaaaaaagtcatcttctaactcatttacaagcttattcaagtgttgtttttcgagtaga |
19567744 |
T |
|
| Q |
410 |
agtagttat |
418 |
Q |
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| T |
19567743 |
agtagttat |
19567735 |
T |
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