View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17998_high_21 (Length: 286)
Name: NF17998_high_21
Description: NF17998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17998_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 50070524 - 50070284
Alignment:
| Q |
11 |
cagagacagttgaaaagatatcatttgaagcgaaattggttgaaggcccaaatggagggtctattggaaagacgacagttaaataccaaaccaaaggaga |
110 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50070524 |
cagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctattggaaagacgaccgttaaataccaaaccaaaggaga |
50070425 |
T |
|
| Q |
111 |
tgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaac |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50070424 |
tgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaac |
50070325 |
T |
|
| Q |
211 |
taatccatcctccaatttaccaagtctagctactatcatca |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50070324 |
taatccatcctccaatttaccaagtctagctactatcatca |
50070284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 50078927 - 50078703
Alignment:
| Q |
11 |
cagagacagttgaaaagatatcatttgaagcgaaattggttgaaggcccaaatggagggtctattggaaagacgacagttaaataccaaaccaaaggaga |
110 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50078927 |
cagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctgttggaaagacgacagttaaataccaaaccaaaggaga |
50078828 |
T |
|
| Q |
111 |
tgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaac |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50078827 |
tgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaac |
50078728 |
T |
|
| Q |
211 |
taatccatcctccaatttaccaagt |
235 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
50078727 |
taatccatcctccaatttaccaagt |
50078703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 10797337 - 10797113
Alignment:
| Q |
11 |
cagagacagttgaaaagatatcatttgaagcgaaattggttgaaggcccaaatggagggtctattggaaagacgacagttaaataccaaaccaaaggaga |
110 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10797337 |
cagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctgttggaaagacgacagttaaataccaaaccaaaggaga |
10797238 |
T |
|
| Q |
111 |
tgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaac |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10797237 |
tgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaac |
10797138 |
T |
|
| Q |
211 |
taatccatcctccaatttaccaagt |
235 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
10797137 |
taatccatcctccaatttaccaagt |
10797113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 13501504 - 13501575
Alignment:
| Q |
142 |
ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaactaa |
213 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||| |||||||||| |||||| |||||| ||||||||||| |
|
|
| T |
13501504 |
ggcaaagctaagggtgatggtcttttcaaggcccttgagggttactgtttggctaatcctgattacaactaa |
13501575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 13515307 - 13515378
Alignment:
| Q |
142 |
ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaactaa |
213 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| || |||||||| |||||| |||||| ||||||||||| |
|
|
| T |
13515307 |
ggcaaagctaagggtgatggtcttttcaaggctatagagggttactgtttggctaatcctgattacaactaa |
13515378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 13541874 - 13541914
Alignment:
| Q |
167 |
tcaaggccattgagggttatgttttggccaatcctaattac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
13541874 |
tcaaggccattgagggttatgttttggcaaaccctaattac |
13541914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 13485788 - 13485853
Alignment:
| Q |
142 |
ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattac |
207 |
Q |
| |
|
|||||||| | |||||||| |||||||||||| |||| ||||| |||||||| |||||| ||||| |
|
|
| T |
13485788 |
ggcaaagctaggggtgatggtcttttcaaggctcttgaaggttacgttttggcaaatcctgattac |
13485853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 13509549 - 13509614
Alignment:
| Q |
142 |
ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattac |
207 |
Q |
| |
|
|||||||| | |||||||| ||||||||| || |||| |||||||||||||| |||||| ||||| |
|
|
| T |
13509549 |
ggcaaagctaggggtgatggtcttttcaaagctcttgaaggttatgttttggcaaatcctgattac |
13509614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University