View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17998_high_27 (Length: 237)
Name: NF17998_high_27
Description: NF17998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17998_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 7567748 - 7567544
Alignment:
| Q |
20 |
atagtgactatgctcaacagtcaaatagtacaatccattgagctatctaggtagataatatatataacacctaaaactaaaagctgattaggagaatact |
119 |
Q |
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| T |
7567748 |
atagtgactatgctcaacagtcaaatagtacaatccattgagctatctaggtagataatatatataacacctaaaactaaacgctgattaggagaatact |
7567649 |
T |
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| Q |
120 |
nnnnnnngtgcttatgactaagcatacttatgccaattaagaagcatagtgatgcaaatcctcataatataaatcttcccttgttgttgcctcaccattc |
219 |
Q |
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| T |
7567648 |
aaaaaaagtgcttatgactaagcatacttatgccaattaagaagcatagtgatgcaaatcctcataatataaatcttcccttgttgttgcctcaccattc |
7567549 |
T |
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| Q |
220 |
ttctc |
224 |
Q |
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||||| |
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| T |
7567548 |
ttctc |
7567544 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 48675798 - 48675879
Alignment:
| Q |
144 |
tacttatgccaattaagaagcatagtgatgcaaatcctcataatataaatcttcccttgttgttgcctcaccattcttctca |
225 |
Q |
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||||||||||||||||||||||||| ||| || | ||||||||||||| ||||| | ||||||||| || ||||| |||| |
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| T |
48675798 |
tacttatgccaattaagaagcatagagatacacactctcataatataaagtttccccttttgttgccttacaattctcctca |
48675879 |
T |
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