View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17998_high_29 (Length: 236)
Name: NF17998_high_29
Description: NF17998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17998_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45566580 - 45566360
Alignment:
| Q |
1 |
tgtaatcatgtttgattcttttttactacagtaattgtgttcgattgatggcattgtaagagttgtgtagaagttaagtagtgaaggatgcagatcttag |
100 |
Q |
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| T |
45566580 |
tgtaatcatgtttgattcttttttactacagtaattgtgtttgattgatggcattgtaagagttgtgtagaagttaagtagtgaaggatgcaaatcttag |
45566481 |
T |
|
| Q |
101 |
aatgaaagcggagaagctaatcttgtttgagaatttaatatgaggtctttttaaatcccttgataatatttaaagagacggtttcaagacagtaatttaa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45566480 |
aatgaaagcggagaagctaatcctgtttgagaatttaatatgaggtctttttaaatcccttgataatatttaaagagacggtttcaagacagtaatttaa |
45566381 |
T |
|
| Q |
201 |
atgacatttcccttgctgatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
45566380 |
atgacatttcccttgctgatt |
45566360 |
T |
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