View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17998_high_3 (Length: 722)

Name: NF17998_high_3
Description: NF17998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17998_high_3
NF17998_high_3
[»] chr7 (1 HSPs)
chr7 (10-708)||(28268123-28268821)


Alignment Details
Target: chr7 (Bit Score: 666; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 10 - 708
Target Start/End: Original strand, 28268123 - 28268821
Alignment:
Q  10 aatatatttcttattgaatgtacacaggtttggagaagaaatgaggccagtaaagctgacaaccaaggtttttggtatgctagtaaatttaacaaattca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28268123 aatatatttcttattgaatgtacacaggtttggagaagaaatgaggccagtaaagctgacaaccaaggtttttggtatgctagtaaatttaacaaattca 28268222  T
Q  110 taattgaacctgtttcatattgttttcattcattgaactaatagaaattagaaagtctacataaccaagttgtatggggtttcctcagaaggnnnnnnng 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  28268223 taattgaacctgtttcatattgttttcattcattgaactaatagaaattagaaagtctacataaccaagttgtatggggtttcctcagaaggaaaaaaag 28268322  T
Q  210 atgacaccaacacaacacaccaaatttgaatttgtgaatttttattgtattagtcaatgtcttgagctttagcctgtagtcctggcagtcacttcaaacc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28268323 atgacaccaacacaacacaccaaatttgaatttgtgaatttttattgtatcagtcaatgtcttgagctttagcctgtagtcctggcagtcacttcaaacc 28268422  T
Q  310 atttattgtcgttttctaccaaatttatgcaggctatgctccagccaagaatgactttctatttgagaaggttggttcgaagttgactaactcacatagt 409  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28268423 atttattgtagttttctaccaaatttatgcaggctatgctccagccaagaatgactttctatttgagaaggttggtttgaagttgactaactcacatagt 28268522  T
Q  410 atcaatacttagaaaaaagtccattctatcatttaatttatcttaatttctgttttaaactaccatgcagcgccttcaaaactatatttttggtaagcag 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28268523 atcaatacttagaaaaaagtccattctatcatttaatttatcttaatttctgttttaaactaccatgcagcgccttcaaaactatatttttggtaagcag 28268622  T
Q  510 tgtaattcagtgcacgagttagcagctttctactattaacatttctacataagaagaaaaatcatccttctttgtgtacaacggatgtcagatattctca 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28268623 tgtaattcagtgcacgagttagcagctttctactattaacatttctacataagaagaaaaatcatccttctttgtgtacaacggatgtcagatattctca 28268722  T
Q  610 tgcaatactccaaagggaaatctgcgcttatattttgttcaacaagaaaaggagctcaagaagcagctcagagactcgctcaaattgtcatgaattttg 708  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28268723 tgcaatactccaaagggaaatctgcgcttatattttgttcaacaagaaaaggagctcaagaagcagctcagagactcgctcaaattgtcatgaattttg 28268821  T

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