View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17998_high_9 (Length: 442)
Name: NF17998_high_9
Description: NF17998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17998_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 21 - 418
Target Start/End: Original strand, 28224618 - 28225017
Alignment:
| Q |
21 |
aaaatagccaaaatatttaacataattaatactgtacactcacggcagaaaaacatactcaatgacataaacatattttcattattagattcagaataaa |
120 |
Q |
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| T |
28224618 |
aaaatagccaaaatatttaacataattaatactgtacactcacggcagaaaaacatactcaatgacataaacatattttcattattagattcagaataaa |
28224717 |
T |
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| Q |
121 |
taagagagattagaaaccattcaatttcaaatcaatgacaagtgtctaaatagttaacgaaaactttcaaataacctggacacagactgataataggata |
220 |
Q |
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| T |
28224718 |
taagagagattagaaaccattcaatttcaaatcaatgagaagtgtccaaatagttaacgaaaactttcaaataacctggacatagactgataataggata |
28224817 |
T |
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| Q |
221 |
tctcttcatctaaaagcattttcatttttcataaaggaaacataccaagaagc--nnnnnnnnntacttgttttaattcaatgcaaaagtagctatggca |
318 |
Q |
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| T |
28224818 |
tcttttcatctaaaagcattttcatttttcataaaggaaacataccaagaagcaaaaaaaaaaatacttgttttaattcaatgcaaaagtagatatggca |
28224917 |
T |
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| Q |
319 |
aagtcttgtgatttgcaaatcaaaattaatggtcaacagatattccttttgaaagaggtatgcattagtcttcttcattgattctttgtggtataatata |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28224918 |
aagtcttgtgatttgcaaatcaaaattaatggtcaacagatattccttttgaaagaggtatgcattagtcttcttcattgattctttgtagtataatata |
28225017 |
T |
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