View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17998_low_13 (Length: 399)

Name: NF17998_low_13
Description: NF17998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17998_low_13
NF17998_low_13
[»] chr2 (15 HSPs)
chr2 (176-383)||(39217595-39217802)
chr2 (180-384)||(39179853-39180057)
chr2 (176-384)||(39386053-39386261)
chr2 (176-384)||(39224854-39225064)
chr2 (176-384)||(39163287-39163495)
chr2 (176-377)||(39379284-39379466)
chr2 (176-384)||(39204122-39204318)
chr2 (176-371)||(39372339-39372534)
chr2 (176-234)||(39396100-39396158)
chr2 (332-370)||(39395981-39396019)
chr2 (176-274)||(44894903-44895002)
chr2 (192-274)||(2363696-2363774)
chr2 (181-234)||(39492929-39492982)
chr2 (176-236)||(39159530-39159590)
chr2 (176-236)||(39209604-39209664)
[»] scaffold0014 (2 HSPs)
scaffold0014 (8-177)||(98076-98245)
scaffold0014 (8-176)||(93438-93606)
[»] chr4 (2 HSPs)
chr4 (8-177)||(13985672-13985841)
chr4 (8-176)||(13990311-13990479)
[»] chr3 (6 HSPs)
chr3 (8-176)||(31192721-31192889)
chr3 (8-176)||(31197432-31197600)
chr3 (8-176)||(52775424-52775592)
chr3 (9-176)||(52770716-52770883)
chr3 (31-148)||(8853005-8853120)
chr3 (185-235)||(51577039-51577089)
[»] scaffold0013 (1 HSPs)
scaffold0013 (8-175)||(245069-245236)
[»] chr6 (3 HSPs)
chr6 (8-177)||(26128923-26129091)
chr6 (8-176)||(26135837-26136005)
chr6 (323-384)||(16115537-16115598)
[»] chr7 (2 HSPs)
chr7 (8-176)||(16258914-16259081)
chr7 (8-176)||(16254204-16254371)
[»] chr5 (1 HSPs)
chr5 (176-384)||(33563516-33563728)
[»] scaffold0488 (1 HSPs)
scaffold0488 (71-176)||(11102-11207)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 176 - 383
Target Start/End: Original strand, 39217595 - 39217802
Alignment:
Q  176 atgccaaactgatttgtgagagcagttgcaagaaaatcaactccattgaaatcaaggttctgcagtttttcttattgaaattctatcttatcaaacatta 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39217595 atgccaaactgatttgtgagagcagttgcaagaaaatcaactccattgaaatcaaggttctgctgtttttcttattgaaattctatcttatcaaacatta 39217694  T
Q  276 cacttcattttcacacatacccttgtatgacagttataaataagctattactatgtacttgaactcaggataaggctagagatcaagaaattgctaattt 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39217695 cacttcattttcacacatacccttgtatgacagttataaataagctattactatgtacttgaactcaggataaggctagagatcaagaaattgctaattt 39217794  T
Q  376 ggggactg 383  Q
    ||||||||    
T  39217795 ggggactg 39217802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 180 - 384
Target Start/End: Original strand, 39179853 - 39180057
Alignment:
Q  180 caaactgatttgtgagagcagttgcaagaaaatcaactccattgaaatcaaggttctgcagtttttcttattgaaattctatcttatcaaacattacact 279  Q
    ||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||  | |    
T  39179853 caaactgatttgtgaaagcagttgcaagaaaaccaattccattgaaatcaaggttcttctgtttttcttattgaaattctattttatcaaacattgtatt 39179952  T
Q  280 tcattttcacacatacccttgtatgacagttataaataagctattactatgtacttgaactcaggataaggctagagatcaagaaattgctaatttgggg 379  Q
     |||||||||| |||| | || |||| ||||||||||||  | ||||| | ||||||||||||||||||||| ||||||||||||||||||| | | |||    
T  39179953 ccattttcacaaatacgcctgcatgagagttataaataaattgttactgtatacttgaactcaggataaggccagagatcaagaaattgctagtcttggg 39180052  T
Q  380 actgt 384  Q
    |||||    
T  39180053 actgt 39180057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 176 - 384
Target Start/End: Complemental strand, 39386261 - 39386053
Alignment:
Q  176 atgccaaactgatttgtgagagcagttgcaagaaaatcaactccattgaaatcaaggttctgcagtttttcttattgaaattctatcttatcaaacatta 275  Q
    |||||| |||||||||||||||||||||   ||||| |||||||||||||||||||||||| |   ||||||||| |||||||||| ||||||||||||     
T  39386261 atgccagactgatttgtgagagcagttgtctgaaaaccaactccattgaaatcaaggttcttcttcttttcttatagaaattctattttatcaaacattc 39386162  T
Q  276 cacttcattttcacacatacccttgtatgacagttataaataagctattactatgtacttgaactcaggataaggctagagatcaagaaattgctaattt 375  Q
     | | ||||||||||||||| ||   |||| ||||||||||||  | ||||||||||||||||||||||||||||| ||||||||||||||||||| | |    
T  39386161 tattccattttcacacatacactaacatgatagttataaataaattgttactatgtacttgaactcaggataaggccagagatcaagaaattgctagtct 39386062  T
Q  376 ggggactgt 384  Q
    |||||||||    
T  39386061 ggggactgt 39386053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 176 - 384
Target Start/End: Original strand, 39224854 - 39225064
Alignment:
Q  176 atgccaaactgatttgtgagagcagttgcaagaaaatcaactccattgaaatcaaggttctgcagtttttcttattgaaattctatcttatcaaacatta 275  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||||||| ||| || |||||||||     
T  39224854 atgccaaacttatttgtgagagcagttgcaagaaaaccaactccattgaaatcaaggttcttctgtttttcttactgaaattatattttttcaaacattc 39224953  T
Q  276 cacttcattttcacacataccc--ttgtatgacagttataaataagctattactatgtacttgaactcaggataaggctagagatcaagaaattgctaat 373  Q
     | | |||||||||||| ||||  ||| ||   ||||||||||||  | ||||| ||||||||||||||||||||||| ||||||||||||||||||| |    
T  39224954 aattccattttcacacacacccccttgcatcctagttataaataaattgttactgtgtacttgaactcaggataaggccagagatcaagaaattgctagt 39225053  T
Q  374 ttggggactgt 384  Q
     ||||||||||    
T  39225054 ctggggactgt 39225064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 176 - 384
Target Start/End: Original strand, 39163287 - 39163495
Alignment:
Q  176 atgccaaactgatttgtgagagcagttgcaagaaaatcaactccattgaaatcaaggttctgcagtttttcttattgaaattctatcttatcaaacatta 275  Q
    |||||||||||||||||||||||||||||||||||   |||||||||| |||||||||||| | |||||||||||||||||| ||| | ||||||| ||     
T  39163287 atgccaaactgatttgtgagagcagttgcaagaaatcaaactccattggaatcaaggttcttctgtttttcttattgaaattttatttaatcaaaccttc 39163386  T
Q  276 cacttcattttcacacatacccttgtatgacagttataaataagctattac-tatgtacttgaactcaggataaggctagagatcaagaaattgctaatt 374  Q
    || | ||| |||||| ||||||||| |||| |||||||||||| || |||| ||||||||||||||||||||||||| |||||| |||||||||||| |     
T  39163387 cattccatattcaca-atacccttgcatgatagttataaataaactgttacttatgtacttgaactcaggataaggccagagatgaagaaattgctagtc 39163485  T
Q  375 tggggactgt 384  Q
    | ||||||||    
T  39163486 ttgggactgt 39163495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 176 - 377
Target Start/End: Complemental strand, 39379466 - 39379284
Alignment:
Q  176 atgccaaactgatttgtgagagcagttgcaagaaaatcaactccattgaaatcaaggttctgcagtttttcttattgaaattctatcttatcaaacatta 275  Q
    |||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||   ||||||||||||| | ||||||  ||||||||||      
T  39379466 atgccaaactgatttgtgcgaacagttgcaagaaaaccaactccattgaaatcaaggttcttttgtttttcttattggatttctattctatcaaacat-- 39379369  T
Q  276 cacttcattttcacacatacccttgtatgacagttataaataagctattactatgtacttgaactcaggataaggctagagatcaagaaattgctaattt 375  Q
       | |||||||||||       ||       |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39379368 ---tccattttcacac-------tg-------gttataaataaattattactatgtacttgaactcaggataaggctagagatcaagaaattgctagttt 39379286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 176 - 384
Target Start/End: Complemental strand, 39204318 - 39204122
Alignment:
Q  176 atgccaaactgatttgtgagagcagttgcaagaaaatcaactccattgaaatcaaggttctgcagtttttcttattgaaattctatcttatcaaacatta 275  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||| | |||||||||||||||||| ||| | ||||||| ||     
T  39204318 atgccaaactgatttgtgagagcagttgcaagaaatcaaactccattgaaatcaaggttcttctgtttttcttattgaaattttatttaatcaaaccttc 39204219  T
Q  276 cacttcattttcacacatacccttgtatgacagttataaataagctattactatgtacttgaactcaggataaggctagagatcaagaaattgctaattt 375  Q
    ||   ||| |||||| ||||||||| ||            ||| || ||||||||||||||||||||||||||||| |||||| |||||||||||| | |    
T  39204218 catcccatattcaca-atacccttgaat-----------ctaaactgttactatgtacttgaactcaggataaggccagagatgaagaaattgctagtct 39204131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 371
Target Start/End: Original strand, 39372339 - 39372534
Alignment:
Q  176 atgccaaactgatttgtgagagcagttgcaagaaaatcaactccattgaaatcaaggttctgcagtttttcttattgaaattctatcttatcaaacatta 275  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||   ||||||||||||   |||||||  ||| |||| |      
T  39372339 atgccaaactgatttgtgagggcagttgcaagaaaaccaactccattgaaatcaaggtacttttgtttttcttatt--tattctattgtatgaaactt-- 39372434  T
Q  276 cacttcattttcacacatacccttgtatgacagttataaataagc-------tattactatgtacttgaactcaggataaggctagagatcaagaaattg 368  Q
       ||||||||| ||  ||||| || |||| |  ||||||||| |       ||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  39372435 ---ttcattttcgcaagtacccctgcatgataactataaataaccaataaattattactatatacttgaactcaggataaggccagagatcaagaaattg 39372531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 39396158 - 39396100
Alignment:
Q  176 atgccaaactgatttgtgagagcagttgcaagaaaatcaactccattgaaatcaaggtt 234  Q
    ||||||||||||||||||||||||| ||||||||||  |||||| ||||||||||||||    
T  39396158 atgccaaactgatttgtgagagcagctgcaagaaaactaactccgttgaaatcaaggtt 39396100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 370
Target Start/End: Complemental strand, 39396019 - 39395981
Alignment:
Q  332 acttgaactcaggataaggctagagatcaagaaattgct 370  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  39396019 acttgaactcaggataaggccagagatcaagaaattgct 39395981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 274
Target Start/End: Complemental strand, 44895002 - 44894903
Alignment:
Q  176 atgccaaactgatttgtga-gagcagttgcaagaaaatcaactccattgaaatcaaggttctgcagtttttcttattgaaattctatcttatcaaacatt 274  Q
    ||||||||||||||||||| ||||| ||||| | ||| | ||||| ||||||||||||||||   |||||||| | | |||| |||| |||| |||||||    
T  44895002 atgccaaactgatttgtgaagagcacttgcatggaaaccgactccgttgaaatcaaggttcttttgtttttctgaattaaatcctattttatgaaacatt 44894903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 2363696 - 2363774
Alignment:
Q  192 tgagagcagttgcaagaaaatcaactccattgaaatcaaggttctgcagtttttcttattgaaattctatcttatcaaacatt 274  Q
    ||||||||||||||||  || ||||||||| ||||||||||||||    |||| |||||| ||||| ||| |||| |||||||    
T  2363696 tgagagcagttgcaaggcaaccaactccatagaaatcaaggttct----ttttacttattcaaattatattttatgaaacatt 2363774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 39492982 - 39492929
Alignment:
Q  181 aaactgatttgtgagagcagttgcaagaaaatcaactccattgaaatcaaggtt 234  Q
    ||||| |||| |||||||| ||||||| ||| ||||||||||||||| ||||||    
T  39492982 aaactaatttctgagagcatttgcaaggaaaccaactccattgaaattaaggtt 39492929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 39159530 - 39159590
Alignment:
Q  176 atgccaaactgatttgtgagagcagttgcaagaaaatcaactccattgaaatcaaggttct 236  Q
    |||| |||| ||||||||| ||||||||  ||||||  ||||| |||||||||||||||||    
T  39159530 atgcgaaacggatttgtgatagcagttgtgagaaaactaactcaattgaaatcaaggttct 39159590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 39209664 - 39209604
Alignment:
Q  176 atgccaaactgatttgtgagagcagttgcaagaaaatcaactccattgaaatcaaggttct 236  Q
    |||| |||| ||||||||| ||||||||  ||||||  ||||| |||||||||||||||||    
T  39209664 atgcgaaacggatttgtgatagcagttgtgagaaaactaactcaattgaaatcaaggttct 39209604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 98076 - 98245
Alignment:
Q  8 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtataataagatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  98076 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtacaataagatt 98175  T
Q  108 ctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaacat 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  98176 ctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaacat 98245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 93438 - 93606
Alignment:
Q  8 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtataataagatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  93438 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtacaataagatt 93537  T
Q  108 ctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaaca 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  93538 ctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaaca 93606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 13985841 - 13985672
Alignment:
Q  8 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtataataagatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13985841 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtacaataagatt 13985742  T
Q  108 ctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaacat 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13985741 ctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaacat 13985672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 13990479 - 13990311
Alignment:
Q  8 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtataataagatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13990479 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtacaataagatt 13990380  T
Q  108 ctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaaca 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13990379 ctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaaca 13990311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 31192721 - 31192889
Alignment:
Q  8 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtataataagatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31192721 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtacaataagatt 31192820  T
Q  108 ctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaaca 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31192821 ctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaaca 31192889  T

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Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 31197432 - 31197600
Alignment:
Q  8 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtataataagatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31197432 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtacaataagatt 31197531  T
Q  108 ctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaaca 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31197532 ctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaaca 31197600  T

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Target: chr3; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 52775592 - 52775424
Alignment:
Q  8 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtataataagatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52775592 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtacaataagatt 52775493  T
Q  108 ctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaaca 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52775492 ctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaaca 52775424  T

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Target: chr3; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 52770883 - 52770716
Alignment:
Q  9 agaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtataataagattc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  52770883 agaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtacaataagattc 52770784  T
Q  109 tatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaaca 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52770783 tatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaaca 52770716  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 8853005 - 8853120
Alignment:
Q  31 ctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtataataagattctatggagttgctaagtaacttg 130  Q
    ||||||||||||||||| ||||||||||||||| ||||  || || ||||||||||||||||||| ||  |||  |||||||||||||| ||||||||||    
T  8853005 ctatatatagctgtttatgatcctaacaaactt-ctaat-gagtttagatcaaatgcagctagtgcatggtaaagttctatggagttgcaaagtaacttg 8853102  T
Q  131 ttctccaagctatctaat 148  Q
     |||||||||||||||||    
T  8853103 atctccaagctatctaat 8853120  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 51577039 - 51577089
Alignment:
Q  185 tgatttgtgagagcagttgcaagaaaatcaactccattgaaatcaaggttc 235  Q
    |||||| ||||||||  |||||||||| |||||||||||||||||||||||    
T  51577039 tgatttctgagagcaactgcaagaaaaccaactccattgaaatcaaggttc 51577089  T

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Target: scaffold0013 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 245069 - 245236
Alignment:
Q  8 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtataataagatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  245069 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtacaataagatt 245168  T
Q  108 ctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaac 175  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  245169 ctatggagttgcaaagtaacttgtactccaagctatctaattataacaaactaagatacaattttaac 245236  T

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Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 26129091 - 26128923
Alignment:
Q  8 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtataataagatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| | |||||||||||||||| |||||||    
T  26129091 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctagt-gaattaagattagatgcagctagtgtatagtaagatt 26128993  T
Q  108 ctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaacat 177  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26128992 ctatggagttgcaaagtaacttgttctccaagctatctaattataacaaacaaagatacaattttaacat 26128923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 26136005 - 26135837
Alignment:
Q  8 gagaagaaaacggttacagc-aagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtataataagat 106  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||| ||||||    
T  26136005 gagaagaaaacggttacagccaagctatatatagctgtttaagatcctaacaaactttctagt-gaattaagatcagatgcagctagtgtatagtaagat 26135907  T
Q  107 tctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaaca 176  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26135906 tctatggagttgcaaagtaacttgttctccaagctatctaattataacaaacaaagatacaattttaaca 26135837  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 384
Target Start/End: Original strand, 16115537 - 16115598
Alignment:
Q  323 ttactatgtacttgaactcaggataaggctagagatcaagaaattgctaatttggggactgt 384  Q
    ||||| || ||||||||||||||||||||||||||||||||||| |||| | |||| |||||    
T  16115537 ttactttgaacttgaactcaggataaggctagagatcaagaaatcgctagtctgggaactgt 16115598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 16259081 - 16258914
Alignment:
Q  8 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtataataagatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| |||||||||||| |||||||    
T  16259081 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctagt-gaattaagatcaaatgtagctagtgtatagtaagatt 16258983  T
Q  108 ctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaaca 176  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  16258982 ctatggagttgcaaagtaacttgttctccaagctatctaattattacaaacaaagatacaattttaaca 16258914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 16254371 - 16254204
Alignment:
Q  8 gagaagaaaacggttacagcaagctatatatagctgtttaagatcctaacaaactttctaaaagaattaagatcaaatgcagctagtgtataataagatt 107  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| |||||||    
T  16254371 gagaagaaaacggttacaacaagttatatatagctgtttaagatcctaacaaactttctagt-gaattaagatcaaatgcagctagtgtatagtaagatt 16254273  T
Q  108 ctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaattttaaca 176  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||    
T  16254272 ctatggagttgcaaagtaacttgttctctaagctatctaattattacaaacaaagatacaattttaaca 16254204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 176 - 384
Target Start/End: Original strand, 33563516 - 33563728
Alignment:
Q  176 atgccaaactgatttgtgagagcagttgcaagaaaatcaactccattgaaatcaaggttctgcagtttttcttattgaaattctatcttatcaaa----- 270  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| ||| ||||         
T  33563516 atgccaaactgatttgtgagagcttttgcaagaaaaccaactccattgaaatcaaggttcttccgtttttcttattgaaattctattttaacaaacattc 33563615  T
Q  271 cattacacttcattttcacacatacccttgtatgacagttataaataagctattactatgtacttgaactcaggataaggctagagatcaagaaattgct 370  Q
    |||| || | ||||| |||||||||||||| |||| |||||||||||| || ||||| |||||||||| |||||||||||| ||||||||||||||||||    
T  33563616 cattccattccatttccacacatacccttgcatgatagttataaataa-ctgttactgtgtacttgaattcaggataaggccagagatcaagaaattgct 33563714  T
Q  371 aatttggggactgt 384  Q
    | | | ||||||||    
T  33563715 agtctcgggactgt 33563728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 71 - 176
Target Start/End: Original strand, 11102 - 11207
Alignment:
Q  71 gaattaagatcaaatgcagctagtgtataataagattctatggagttgctaagtaacttgttctccaagctatctaattataacaaactaagatacaatt 170  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11102 gaattaagatcaaatgcagctagtgtatagtaagattctatggagttgcaaagtaacttgttctccaagctatctaattataacaaacaaagatacaatt 11201  T
Q  171 ttaaca 176  Q
    ||||||    
T  11202 ttaaca 11207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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