View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17998_low_15 (Length: 386)

Name: NF17998_low_15
Description: NF17998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17998_low_15
NF17998_low_15
[»] chr6 (12 HSPs)
chr6 (1-373)||(18781609-18781982)
chr6 (1-273)||(20419562-20419833)
chr6 (1-273)||(20414829-20415100)
chr6 (1-273)||(30518209-30518480)
chr6 (1-273)||(18553296-18553566)
chr6 (1-207)||(20417475-20417682)
chr6 (144-373)||(20417683-20417911)
chr6 (50-252)||(6230608-6230808)
chr6 (226-373)||(2147966-2148112)
chr6 (123-183)||(2147847-2147908)
chr6 (75-119)||(21299398-21299442)
chr6 (75-116)||(12639527-12639568)
[»] chr1 (10 HSPs)
chr1 (1-373)||(22062067-22062439)
chr1 (1-313)||(20126987-20127298)
chr1 (1-237)||(6473766-6474002)
chr1 (1-237)||(20190350-20190590)
chr1 (49-237)||(24157028-24157215)
chr1 (226-373)||(6473242-6473389)
chr1 (123-186)||(40554445-40554509)
chr1 (75-119)||(37260438-37260482)
chr1 (123-181)||(48463137-48463195)
chr1 (126-181)||(48463719-48463774)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-313)||(136673-136984)
[»] chr4 (12 HSPs)
chr4 (1-373)||(17266620-17266996)
chr4 (1-373)||(34098577-34098947)
chr4 (1-238)||(9167176-9167413)
chr4 (1-235)||(15017566-15017800)
chr4 (1-235)||(15019206-15019440)
chr4 (1-237)||(39488073-39488309)
chr4 (88-279)||(17780664-17780859)
chr4 (87-257)||(23090830-23090998)
chr4 (139-205)||(19460135-19460201)
chr4 (1-64)||(20264961-20265024)
chr4 (124-183)||(11099045-11099105)
chr4 (78-119)||(11475673-11475714)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-373)||(33072-33445)
[»] scaffold0076 (1 HSPs)
scaffold0076 (1-325)||(54676-54999)
[»] scaffold0075 (1 HSPs)
scaffold0075 (37-314)||(25720-25997)
[»] chr8 (5 HSPs)
chr8 (1-273)||(20730831-20731102)
chr8 (49-118)||(18446237-18446306)
chr8 (123-183)||(23015809-23015870)
chr8 (75-119)||(16417556-16417600)
chr8 (75-119)||(18774305-18774349)
[»] chr3 (16 HSPs)
chr3 (1-235)||(5553466-5553700)
chr3 (10-271)||(17236774-17237030)
chr3 (202-373)||(16345391-16345563)
chr3 (39-204)||(22271157-22271325)
chr3 (1-109)||(23433138-23433245)
chr3 (49-140)||(16019425-16019516)
chr3 (123-183)||(16347198-16347259)
chr3 (123-183)||(47418036-47418097)
chr3 (75-119)||(13179891-13179935)
chr3 (75-119)||(13184549-13184593)
chr3 (75-116)||(33757970-33758011)
chr3 (87-182)||(13956976-13957070)
chr3 (87-182)||(15381933-15382027)
chr3 (87-182)||(15387669-15387763)
chr3 (87-161)||(13962709-13962782)
chr3 (283-330)||(26548241-26548289)
[»] chr2 (11 HSPs)
chr2 (1-235)||(15409793-15410026)
chr2 (1-273)||(6050147-6050419)
chr2 (53-273)||(33809331-33809548)
chr2 (1-99)||(23732370-23732468)
chr2 (123-186)||(44792884-44792948)
chr2 (123-183)||(24808197-24808258)
chr2 (75-119)||(44794775-44794819)
chr2 (243-348)||(1003138-1003243)
chr2 (123-183)||(18535362-18535423)
chr2 (123-181)||(24806340-24806399)
chr2 (123-162)||(31939075-31939114)
[»] chr7 (9 HSPs)
chr7 (1-238)||(9595360-9595597)
chr7 (1-238)||(9646323-9646560)
chr7 (1-273)||(32706295-32706568)
chr7 (123-275)||(5247437-5247589)
chr7 (75-119)||(16157057-16157101)
chr7 (75-119)||(21368645-21368689)
chr7 (87-182)||(14575569-14575663)
chr7 (87-182)||(14578845-14578939)
chr7 (75-119)||(22707689-22707733)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-273)||(4517-4788)
[»] chr5 (8 HSPs)
chr5 (1-273)||(4568208-4568478)
chr5 (1-235)||(244365-244598)
chr5 (1-243)||(29950103-29950345)
chr5 (1-243)||(29951741-29951983)
chr5 (40-140)||(11126378-11126478)
chr5 (291-350)||(34596705-34596764)
chr5 (144-189)||(34597760-34597804)
chr5 (79-119)||(22821301-22821341)
[»] scaffold0585 (1 HSPs)
scaffold0585 (1-272)||(796-1065)
[»] scaffold0146 (3 HSPs)
scaffold0146 (1-271)||(6576-6843)
scaffold0146 (1-271)||(9471-9738)
scaffold0146 (1-271)||(17138-17405)
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-193)||(22539-22730)
[»] scaffold0254 (2 HSPs)
scaffold0254 (226-373)||(24429-24575)
scaffold0254 (123-183)||(24311-24372)
[»] scaffold0269 (1 HSPs)
scaffold0269 (166-236)||(1491-1561)
[»] scaffold0180 (1 HSPs)
scaffold0180 (123-183)||(10850-10911)
[»] scaffold0139 (1 HSPs)
scaffold0139 (123-183)||(6465-6526)
[»] scaffold0018 (1 HSPs)
scaffold0018 (123-183)||(141-202)
[»] scaffold0002 (1 HSPs)
scaffold0002 (123-183)||(374790-374851)
[»] scaffold0671 (1 HSPs)
scaffold0671 (75-119)||(2155-2199)
[»] scaffold0359 (1 HSPs)
scaffold0359 (75-119)||(8768-8812)
[»] scaffold0065 (1 HSPs)
scaffold0065 (75-119)||(33780-33824)
[»] scaffold0003 (1 HSPs)
scaffold0003 (75-119)||(288993-289037)
[»] scaffold0025 (1 HSPs)
scaffold0025 (123-183)||(55425-55486)
[»] scaffold0013 (1 HSPs)
scaffold0013 (123-183)||(241614-241675)


Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 18781982 - 18781609
Alignment:
Q  1 tcggaagcaaattaa-gaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaa 99  Q
    ||||||||||||||| ||||| ||||| |||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  18781982 tcggaagcaaattaatgaatattgttggtggaaatggtgaaaagactaaaagatgaagaaatggaatggatagacagggacgccacactttctaatccaa 18781883  T
Q  100 gaaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctct 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18781882 gaaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggttggttcaatccagaaccacaagagacaaagctct 18781783  T
Q  200 caatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatagagcacttgttgcaagtatctcaatggac 299  Q
    |||||||||||||||||||||||||||| |||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18781782 caatacacatatgtgtaaaattctataatattcaacttttttctatttcatagagaaacttacaatttatagagcacttgttgcaagtatctcaatggac 18781683  T
Q  300 actaataaattaaaagacacctaatattattctaaagaaaagaaataaatgacatactagccttacaattattc 373  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18781682 actaataaattaaaatacacctaatattattctaaagaaaagaaataaatgacatactagccttacaattattc 18781609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 20419562 - 20419833
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||| ||||| ||||| |||||||| ||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20419562 tcggaagcaaattatgaatattgttggtggaaatggtgagaagactaaaagatgaagaaatggaatggatagacagggacgccacactttctaatccaag 20419661  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||    
T  20419662 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggttggttcaatccagaaccacaagagacaagactctc 20419761  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatagag 273  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  20419762 aatacacatatgtgtaaaattctataaaattcaac-tccctttatttcatagagaaacttacaatttatagag 20419833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 20414829 - 20415100
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||| ||||| ||||| |||||||| ||| |||||||||| |||||| ||| |||||||||||||||||||||||||||||||||| |||    
T  20414829 tcggaagcaaattatgaatattgttggtggaaatggtgagaagactaaaagatgaagaaattgaatggatagacagggacgccacactttctaatctaag 20414928  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  20414929 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggttggttcaatccagaaccacaagagacaaggctctc 20415028  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatagag 273  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  20415029 aatacacatatgtgtaaaattctataaaattcaac-tccctttatttcatagagaaacttacaatttatagag 20415100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 30518209 - 30518480
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||| ||||| ||||| || ||||| ||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||    
T  30518209 tcggaagcaaattatgaatattgttggtgaaaatggtgaaaagactaaaaa-tgaagaaatgaaatggatagacagggacgccacactttctaatccaag 30518307  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30518308 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 30518407  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatagag 273  Q
    ||||||||||||||||||||||||||| ||||||| |  |||||||||||||||||| |||||||||||||||    
T  30518408 aatacacatatgtgtaaaattctataatattcaacctttttttatttcatagagaaagttacaatttatagag 30518480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 18553566 - 18553296
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaa-tgaaggaatggaatggatagacagggacgccacactttctaatccaa 99  Q
    |||||||||||||| ||||||||||| |||||||| ||| |||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||    
T  18553566 tcggaagcaaattatgaataatgttggtggaaatggtgagaagactaaaaaaatgaagaaatggaattgatagacagggacgccacactttctaatccaa 18553467  T
Q  100 gaaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctct 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  18553466 gaaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggttggttcaatccagaaccacaagagacaaggctct 18553367  T
Q  200 caatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatagag 273  Q
    ||||||||  ||||||||||||||||||||||||||||  | |||||||||||||||| |||||||||||||||    
T  18553366 caatacac--atgtgtaaaattctataaaattcaactt-atcttatttcatagagaaagttacaatttatagag 18553296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 20417475 - 20417682
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaa-aatgaaggaatggaatggatagacagggacgccacactttctaatccaa 99  Q
    |||||||||||||| ||||||||||| |||||||| ||| |||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  20417475 tcggaagcaaattatgaataatgttggtggaaatggtgagaagactaaaaaaatgaagaaatggaattgatagacagggacgccacactttctaatccaa 20417574  T
Q  100 gaaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctct 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  20417575 gaaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggttggttcaatccagaaccacaagagacaaggctct 20417674  T
Q  200 caatacac 207  Q
    ||||||||    
T  20417675 caatacac 20417682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 144 - 373
Target Start/End: Original strand, 20417683 - 20417911
Alignment:
Q  144 gatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataaaattcaacttcctttt 243  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  || |    
T  20417683 gatttcttgataagatcaaggttggttcaatccagaaccacaagagacaaggctctcaatacacatatgtgtaaaattctataaaattcaactt-tttct 20417781  T
Q  244 atttcatagagaaacttacaatttatagagcacttgttgcaagtatctcaatggacactaataaattaaaagacacctaatattattctaaagaaaagaa 343  Q
    ||||||||  ||||||||||||||||||||| |||| |  ||  | ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20417782 atttcataatgaaacttacaatttatagagctcttgctctaatgaactcaaaggacactaataaattaaaatacacctaatattattctaaagaaaagaa 20417881  T
Q  344 ataaatgacatactagccttacaattattc 373  Q
    ||||||||||||||||||||||||||||||    
T  20417882 ataaatgacatactagccttacaattattc 20417911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 50 - 252
Target Start/End: Original strand, 6230608 - 6230808
Alignment:
Q  50 aaatgaaggaatggaatggatagacagggacgccacactttctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatt 147  Q
    |||||||| |||||||||||||||||||  |  ||| ||||  ||||||| ||||  ||||||| | |||||||  | |||||||| ||||||| |||||    
T  6230608 aaatgaagaaatggaatggatagacaggcgccacactcttttcaatccaaaaaagaatgataagccgatggatg--aagatcgccataagaaatgtgatt 6230705  T
Q  148 tcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataaaattcaacttccttttattt 247  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  6230706 tcttgataagatcaaggatggttcaatccagaaccacaagagtcaaaactctcaatacacatatgtgtaaaattctacaaaattcaactt--ttttattt 6230803  T
Q  248 catag 252  Q
    |||||    
T  6230804 catag 6230808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 226 - 373
Target Start/End: Original strand, 2147966 - 2148112
Alignment:
Q  226 aaaattcaacttccttttatttcatagagaaacttacaatttatagagcacttgttgcaagtatctcaatggacactaataaattaaaagacacctaata 325  Q
    ||||||| ||||||||| ||||||||  ||||||||||||| ||||||| |||| |  ||  | ||||| ||||||||||||||||||| ||||||| ||    
T  2147966 aaaattctacttccttt-atttcataatgaaacttacaattcatagagctcttgctctaatgaactcaaaggacactaataaattaaaatacacctagta 2148064  T
Q  326 ttattctaaagaaaagaaataaatgacatactagccttacaattattc 373  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2148065 ttattctaaagaaaagaaataaatgacatactaaccttacaattattc 2148112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 2147847 - 2147908
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacca 183  Q
    ||||||||||||||||||  || ||||||||||||||||| | |||||||||||||||||||    
T  2147847 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacca 2147908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 21299398 - 21299442
Alignment:
Q  75 agggacgccacactttctaatccaagaaagtgataagtctatgga 119  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  21299398 agggacgccacactttctaatcctagaaaatgataagtctatgga 21299442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 12639568 - 12639527
Alignment:
Q  75 agggacgccacactttctaatccaagaaagtgataagtctat 116  Q
    ||||||||||||||||||||||| ||||| ||||||||||||    
T  12639568 agggacgccacactttctaatcctagaaaatgataagtctat 12639527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 22062067 - 22062439
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaa-aatgaaggaatggaatggatagacagggacgccacactttctaatccaa 99  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22062067 tcggaagcaaattatgaataatgttggtggaaatggtgaaaagactaaaaaaatgaagaaatggaatggatagacagggacgccacactttctaatccaa 22062166  T
Q  100 gaaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctct 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22062167 gaaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggttggttcaatccagaaccacaagagacaaagctct 22062266  T
Q  200 caatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatagagcacttgttgcaagtatctcaatggac 299  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||| |||| |  ||  | ||||| ||||    
T  22062267 caatacacatatgtgtaaaattctataaaattcaacttcc-tttatttcataatgaaacttacaatttatagagctcttgctctaatgaactcaaaggac 22062365  T
Q  300 actaataaattaaaagacacctaatattattctaaagaaaagaaataaatgacatactagccttacaattattc 373  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  22062366 actaataaattaaaatacacctaatattattctaaagaaaagaaataaatgacatactagcctttaaattattc 22062439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 20127298 - 20126987
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||| ||||| ||||| || ||||| ||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20127298 tcggaagcaaattatgaatattgttggtgaaaatggtgaaaagactaaaac-tgaagaaatggaatggatagacagggacgccacactttctaatccaag 20127200  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20127199 aaagcgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 20127100  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatagagcacttgttgcaagtatctcaatggaca 300  Q
    ||||||||||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  20127099 aatacacatatgtgtaaaattctataatattcaactttttttcatttcatagagaaacttacaatttatagagcacttgttgcaagtatctcaatggacc 20127000  T
Q  301 ctaataaattaaa 313  Q
    |||||||||||||    
T  20126999 ctaataaattaaa 20126987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 6474002 - 6473766
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||| || |||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6474002 tcggaagcaaattatgattaatgttggtggaaatggtgaaaagactaaaaaatgaagaaatggaatggatagacagggacgccacactttctaatccaag 6473903  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  6473902 aaagtgataagtctatggatgcgaggatcgtcacaagaaatgtgatttcttgataagatcaaggatgattcaatccagaaccacaagagacaaggctctc 6473803  T
Q  201 aatacacatatgtgtaaaattctataaaattcaactt 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  6473802 aatacacatatgtgtaaaattctataaaattcaactt 6473766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 20190350 - 20190590
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaa-----atgaaggaatggaatggatagacagggacgccacactttctaat 95  Q
    |||||||||| ||| ||||||||||| |||||||| |||||||||||||||     |||||| ||||||||||||||||| |||||||||||||||||||    
T  20190350 tcggaagcaacttatgaataatgttggtggaaatggtgaaaagactaaaaattaaaatgaagaaatggaatggatagacaaggacgccacactttctaat 20190449  T
Q  96 ccaagaaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaag 195  Q
    |||||||| ||||||||||||||| |||||||| ||||||||||  || || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20190450 ccaagaaactgataagtctatggaagcgaggattgccacaagaac-ataatgtcttgataagatcaaggatggttcaatccagaaccacaagagacaaag 20190548  T
Q  196 ctctcaatacacatatgtgtaaaattctataaaattcaactt 237  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||    
T  20190549 ctctcaatacacataagtgtaaaattctacaaagttcaactt 20190590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 49 - 237
Target Start/End: Original strand, 24157028 - 24157215
Alignment:
Q  49 aaaatgaaggaatggaatggatagacagggacgccacactttctaatccaagaaagtgataagtctatggatgcgaggatcgccacaagaaatatgattt 148  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| |||||||    
T  24157028 aaaatgaagaaatggaatggatagacagggacgccgcactttctaattcaagaaagtgataagtcaatggatgcgaggatcaccacaagaaa-atgattt 24157126  T
Q  149 cttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataaaattcaactt 237  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24157127 cttgataagatcaaggatggttcgatccataaccacaagagacaaagctctcaatacacatatgtgtaaaattctataaaattctactt 24157215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 226 - 373
Target Start/End: Complemental strand, 6473389 - 6473242
Alignment:
Q  226 aaaattcaacttccttttatttcatagagaaacttacaatttatagagcacttgttgcaa-gtatctcaatggacactaataaattaaaagacacctaat 324  Q
    ||||||| ||||  ||||||||||||  ||||||||||||||||||||| |||| |  || ||| ||||| ||||||||||||||||||| |||||||||    
T  6473389 aaaattctacttttttttatttcataatgaaacttacaatttatagagctcttgctctaatgta-ctcaaaggacactaataaattaaaatacacctaat 6473291  T
Q  325 attattctaaagaaaagaaataaatgacatactagccttacaattattc 373  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6473290 attagtctaaagaaaagaaataaatgacatactagccttacaattattc 6473242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 40554509 - 40554445
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaaccacaa 186  Q
    ||||||||||||||||||  || ||||||||||||||||| | ||||||||||||||||||||||    
T  40554509 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaaccacaa 40554445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 37260482 - 37260438
Alignment:
Q  75 agggacgccacactttctaatccaagaaagtgataagtctatgga 119  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  37260482 agggacgccacactttctaatcctagaaaatgataagtctatgga 37260438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 48463195 - 48463137
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaac 181  Q
    |||||||| |||||||||  || |||||||||||||||||  |||||||||||||||||    
T  48463195 gaggatcgtcacaagaaacgtggtttcttgataagatcaataatggttcaatccagaac 48463137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 48463719 - 48463774
Alignment:
Q  126 gatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaac 181  Q
    ||||| |||||||||  || ||||||||||||||||| |||||||||||| |||||    
T  48463719 gatcgacacaagaaacgtggtttcttgataagatcaatgatggttcaatcgagaac 48463774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 136984 - 136673
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||    
T  136984 tcggaaggaaattaagaataatgttgatggaaatggtgaaaagactaaaaa-tgaagaaatggattggatagacagggacgccacactttctaatccaag 136886  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  136885 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggtttaatccagaaccacaagagacaaagctctc 136786  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatagagcacttgttgcaagtatctcaatggaca 300  Q
    ||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  136785 aatacacatatgtgtaaaattctataatattcaacttttttttatttcatagagaaacttacaatttatagagcacttgttgcaagtatctcaatggacc 136686  T
Q  301 ctaataaattaaa 313  Q
    |||||||||||||    
T  136685 ctaataaattaaa 136673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 17266620 - 17266996
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaa-tgaaggaatggaatggatagacagggacgccacactttctaatccaa 99  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  17266620 tcggaagcaaattatgaataatgttggtggaaatggtgaaaagactaaaaaaatgaagaaatggaatggatagacagggacgccacactttctaatccaa 17266719  T
Q  100 gaaagtgataagtctatggatgcgaggatcgccacaagaaa-tatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctc 198  Q
    |||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17266720 gaaagtgataagtctatggatgcgaggatcaccacaagaaaatctgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctc 17266819  T
Q  199 tcaatacacatatgtgtaaaattctataaaattcaact--tccttttatttcatagagaaacttacaatttatagagcacttgttgcaagtatctcaatg 296  Q
    |||||||||||||||||||||||||| |||||||||||  || ||||||||||||  ||||||||||||||||||||| |||| |  ||  | ||||| |    
T  17266820 tcaatacacatatgtgtaaaattctacaaaattcaacttctctttttatttcataatgaaacttacaatttatagagctcttgctctaatgaactcaaag 17266919  T
Q  297 gacactaataaattaaaagacacctaatattattctaaagaaaagaaataaatgacatactagccttacaattattc 373  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  17266920 gacactaataaattaaaatacacctaatattattctaaagaaaagaaataaatgacatactagcctttaaattattc 17266996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 34098947 - 34098577
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||     
T  34098947 tcggaagcaaattatgaataatgttggtggaaatggtgaaatgactaaaaaatgaagaaatgaaatggatagacagggacgccacactttctaatccaat 34098848  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    |||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34098847 aaagtgataagtctatagatgcgaggatcgccacaagaaa-ataatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagttctc 34098749  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatagagcacttgttgcaagtatctcaatggaca 300  Q
    |||||||||| |||||||||||||||||||||||||| | |||||||||||  ||||||||||||||||||||| |||| |  ||  | ||||| |||||    
T  34098748 aatacacataagtgtaaaattctataaaattcaactttc-tttatttcataatgaaacttacaatttatagagctcttgctctaatgaactcaaaggaca 34098650  T
Q  301 ctaataaattaaaagacacctaatattattctaaagaaaagaaataaatgacatactagccttacaattattc 373  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34098649 ctaataaattaaaatacacctaatattgttctaaagaaaagaaataaatgacatactagccttacaattattc 34098577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 9167413 - 9167176
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||    
T  9167413 tcggaagtaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaagaaatgaaattgatagacagggacgccacactttctaatccaag 9167314  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9167313 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggttggttcaatccagaaccacaagagacaaagctctc 9167214  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttc 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9167213 aatacacatatgtgtaaaattctataaaattcaacttc 9167176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 15017566 - 15017800
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15017566 tcggaagcaaattatgaatattgttggtggaaatggtgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 15017665  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15017666 aaagtgataagtctatggatgcgaggatcgccataagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 15017765  T
Q  201 aatacacatatgtgtaaaattctataaaattcaac 235  Q
    ||||||||||||||||||||||||||| |||||||    
T  15017766 aatacacatatgtgtaaaattctataatattcaac 15017800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 15019206 - 15019440
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||| ||||| ||||| |||||||| ||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15019206 tcggaagcaaattatgaatattgttggtggaaatggtgagaagactaaaagatgaagaaatggaatggatagacagggacgccacactttctaatccaag 15019305  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15019306 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 15019405  T
Q  201 aatacacatatgtgtaaaattctataaaattcaac 235  Q
    ||||||||||||||||||||||||||| |||||||    
T  15019406 aatacacatatgtgtaaaattctataatattcaac 15019440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 39488073 - 39488309
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||| ||||| ||||| ||||| || |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39488073 tcggaagcaaattatgaatattgttggtggaattggtgaaaatactaaaaaatgaagaaatggaatggatagacagggacgccacactttctaatccaag 39488172  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39488173 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatgattcaatccagaaccacaagagacaaagctctc 39488272  T
Q  201 aatacacatatgtgtaaaattctataaaattcaactt 237  Q
    |||||||||||||||||||||||||||||||| ||||    
T  39488273 aatacacatatgtgtaaaattctataaaattccactt 39488309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 88 - 279
Target Start/End: Complemental strand, 17780859 - 17780664
Alignment:
Q  88 tttctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttc----aatccagaac 181  Q
    |||||||||||||||||  ||||||| |  |  |||| |||||||||||||||||| |||||||||||||| ||||| ||| ||||    |||||| |||    
T  17780859 tttctaatccaagaaagattgataagccggtacatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagatagttcgatcaatccataac 17780760  T
Q  182 cacaagagacaaagctctcaatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatagagcacttg 279  Q
    ||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||||||||||| |||||||| ||||    
T  17780759 cacaagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaacttcc-ttcatttcattgagaaacttacaatatatagagctcttg 17780664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 87 - 257
Target Start/End: Original strand, 23090830 - 23090998
Alignment:
Q  87 ctttctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccac 184  Q
    ||||||||||||||||||  ||||||| | ||||||   | ||||||||||||||| |  |||| |||||||||||||||||| ||||||| | |||| |    
T  23090830 ctttctaatccaagaaagaatgataagccgatggata--aagatcgccacaagaaa-agaatttattgataagatcaaggatgattcaatctaaaaccgc 23090926  T
Q  185 aagagacaaagctctcaatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaa 257  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||| |||||  ||||||||||||||||||    
T  23090927 aagagacaaagctatcaatacacatatgtataaaattctataaaatttaactt-attttatttcatagagaaa 23090998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 19460201 - 19460135
Alignment:
Q  139 aatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctcaatac 205  Q
    ||||||||||||||||||||||||| || ||||||| || ||||||||| |||||| |||| |||||    
T  19460201 aatatgatttcttgataagatcaagaatagttcaattcataaccacaagggacaaaactcttaatac 19460135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 20264961 - 20265024
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatgga 64  Q
    |||||||||||||| ||||||||||  |||||||| |||||||| ||||||| |||| ||||||    
T  20264961 tcggaagcaaattatgaataatgtttgtggaaatggtgaaaagattaaaaaaagaagaaatgga 20265024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 11099105 - 11099045
Alignment:
Q  124 aggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacca 183  Q
    ||||| |||||||||||  || ||||||||||||||||| | |||||||||||||||||||    
T  11099105 aggattgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacca 11099045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 11475714 - 11475673
Alignment:
Q  78 gacgccacactttctaatccaagaaagtgataagtctatgga 119  Q
    |||||||||||||||||||| ||||| ||||||||| |||||    
T  11475714 gacgccacactttctaatcctagaaaatgataagtccatgga 11475673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 33445 - 33072
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||| ||||||| ||||  ||||| | |||||| ||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  33445 tcggaaacaaattatgaattttgttggtagaaatggtgaaaagactagaaaatgaagaaatggaattgatagacagggacgccacactttctaatccaag 33346  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    ||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33345 aaattgataagtctatggatgcgaggatcgccacaagaaa-ataatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 33247  T
Q  201 aatacacatatgtgtaaaattctataaaattcaact--tccttttatttcatagagaaacttacaatttatagagcacttgttgcaagtatctcaatgga 298  Q
    |||||||||||||||||||||||| |||||||||||  || ||||||||||||  ||||||||||||||||||||| |||| |  ||  | ||||| |||    
T  33246 aatacacatatgtgtaaaattctacaaaattcaacttctctttttatttcataatgaaacttacaatttatagagctcttgctctaatgaactcaaagga 33147  T
Q  299 cactaataaattaaaagacacctaatattattctaaagaaaagaaataaatgacatactagccttacaattattc 373  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33146 cactaataaattaaaatacacctaatattattctaaagaaaagaaataaatgacatactagccttacaattattc 33072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 54999 - 54676
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||||||||||||||||||    
T  54999 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaagatgaagaaatggaatggatatatagggacgccacactttctaatccaag 54900  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  54899 aaagtgataagtctatggatgcgagtatcgccacaagaaatatgatttcttgataagatcaaggttggttcaatccagaaccacaagagacaaggctctc 54800  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatagagcacttgttgcaagtatctcaatggaca 300  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||| |||| |  ||  | ||||| |||||    
T  54799 aatacacatatgtgtaaaattctataaaattcaacttcc-tttatttcataatgaaacttacaatttatagagctcttgctctaatgaactcaaaggaca 54701  T
Q  301 ctaataaattaaaagacacctaata 325  Q
    |||||||||||||| ||||||||||    
T  54700 ctaataaattaaaatacacctaata 54676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 37 - 314
Target Start/End: Original strand, 25720 - 25997
Alignment:
Q  37 tgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaagaaagtgataagtctatggatgcgaggatcgccacaa 136  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25720 tgaaaagactaaaaaatgaagaaatggaatggatagacagggacgccacactttctaatccaagaaagtgataagtatatggatgcgaggatcgccacaa 25819  T
Q  137 gaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataaaattcaact 236  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25820 gaaatatgatttcttgataagatcaaggttggttcaatccagaactacaagagacaaagctctcactacacatatgtgtaaaattctataaaattcaact 25919  T
Q  237 tccttttatttcatagagaaacttacaatttatagagcacttgttgcaagtatctcaatggacactaataaattaaaa 314  Q
    || ||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  25920 tctttttatttcataataaaacttacaatttatagagtacttgttgcaagtatctcaatggaccctaataaattaaaa 25997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 20731102 - 20730831
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  20731102 tcggaagcaaattaagaataatgttgatggaaatggtgaaaagactaaagattgaagaaattgaatggatagacagggacgccacactttctaatccaag 20731003  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20731002 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggttggttcaatccagaaccacaagagacaaagctctc 20730903  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatagag 273  Q
    ||||||||||||||||||||||||||||||||||| |  | |||||||||||||||| |||||||||||||||    
T  20730902 aatacacatatgtgtaaaattctataaaattcaacct-atcttatttcatagagaaagttacaatttatagag 20730831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 18446306 - 18446237
Alignment:
Q  49 aaaatgaaggaatggaatggatagacagggacgccacactttctaatccaagaaagtgataagtctatgg 118  Q
    |||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18446306 aaaatggagaaatggaatggaaagaaagggacgccacactttctaatccaagaaagtgataagtctatgg 18446237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 23015809 - 23015870
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacca 183  Q
    ||||||||||||||||||  || ||||||||||||||||| | |||||||||||||||||||    
T  23015809 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacca 23015870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 16417556 - 16417600
Alignment:
Q  75 agggacgccacactttctaatccaagaaagtgataagtctatgga 119  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  16417556 agggacgccacactttctaatcctagaaaatgataagtctatgga 16417600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 18774305 - 18774349
Alignment:
Q  75 agggacgccacactttctaatccaagaaagtgataagtctatgga 119  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  18774305 agggacgccacactttctaatcctagaaaatgataagtctatgga 18774349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 5553700 - 5553466
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5553700 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaagaaatggaatggatagacagggacgccacactttctaatccaag 5553601  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  5553600 aaagtgataagtctatgtatgcgaggatcgccacaagaaatatgatttcttgataagatcaatgatggttcaatccagaaccacaagagataaagctctc 5553501  T
Q  201 aatacacatatgtgtaaaattctataaaattcaac 235  Q
    |||||||||||||||||||||||||||||||||||    
T  5553500 aatacacatatgtgtaaaattctataaaattcaac 5553466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 17236774 - 17237030
Alignment:
Q  10 aattaagaataatgttgatggaaatgatgaaaagactaaaa--aatgaaggaatggaatggatagacagggacgccacactttctaatccaagaaagtga 107  Q
    ||||| ||||||||||| |||||||| ||||||||||||||  ||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||    
T  17236774 aattatgaataatgttggtggaaatggtgaaaagactaaaaaaaatgaagaaatggaatggacagacagggatgccacactttttaatccaagaaagtga 17236873  T
Q  108 taagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctcaatacac 207  Q
    ||||| ||| |||||||||||||||||||||||| |||||| |||||||||      ||||||||| |||||||||||||||||||| ||||| ||||||    
T  17236874 taagtttatcgatgcgaggatcgccacaagaaatgtgattttttgataaga------atggttcaaaccagaaccacaagagacaaaactctcgatacac 17236967  T
Q  208 atatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatag 271  Q
    ||| ||||||||||||| ||||||||||||  |||||||||||| ||||||||||||| |||||    
T  17236968 ataagtgtaaaattctacaaaattcaactt-gttttatttcataaagaaacttacaatatatag 17237030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 202 - 373
Target Start/End: Original strand, 16345391 - 16345563
Alignment:
Q  202 atacacatatgtgtaaaattctataaaattcaacttcctttt-atttcatagagaaacttacaatttatagagcacttgttgcaagtatctcaatggaca 300  Q
    ||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16345391 atacacatatgtgtaaaattctataaaattcaactttttttttatttcatagagaaacttacaatttatagagcacttgttgcaagtatctcaatggacc 16345490  T
Q  301 ctaataaattaaaagacacctaatattattctaaagaaaagaaataaatgacatactagccttacaattattc 373  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16345491 ctaataaattaaaatacacctaatattattctaaagaaaagaaataaatgacatactaaccttacaattattc 16345563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 39 - 204
Target Start/End: Complemental strand, 22271325 - 22271157
Alignment:
Q  39 aaaagact-aaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaagaaagtgataagtctatggatgcgag--gatcgccaca 135  Q
    |||||||| |||||||| || ||| ||||||||| ||   |||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  22271325 aaaagactgaaaaaatgtagaaatagaatggataaactcagacgccacactttctaatcccagaaagtgataagtctatggatgcgagatgatcgccaca 22271226  T
Q  136 agaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctcaata 204  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  22271225 agaaatgtgatttcttgataagatcaatgatggttcaatccagaaccacaagagacaaaactctcaata 22271157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 23433245 - 23433138
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||  ||||||||||| || ||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  23433245 tcggaagcaaattctgaataatgttggtgaaaatggtgaaaagactaaaaa-tgaagaaatggaatggatagacatggacgccacactttctaatccaag 23433147  T
Q  101 aaagtgata 109  Q
    |||||||||    
T  23433146 aaagtgata 23433138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 16019425 - 16019516
Alignment:
Q  49 aaaatgaaggaatggaatggatagacagggacgccacactttctaatccaagaaagtgataagtctatggatgcgaggatcgccacaagaaa 140  Q
    |||||| || ||||||||||| ||| |||||| | ||||||||||||||||||||||||||||||| |||    ||||||| ||||||||||    
T  16019425 aaaatggagaaatggaatggaaagaaagggacactacactttctaatccaagaaagtgataagtctctgggattgaggatcaccacaagaaa 16019516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 16347259 - 16347198
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacca 183  Q
    ||||||||||||||||||  || ||||||||||||||||| | |||||||||||||||||||    
T  16347259 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacca 16347198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 47418036 - 47418097
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacca 183  Q
    ||||||||||||||||||  || ||||||||||||||||| | |||||||||||||||||||    
T  47418036 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacca 47418097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 13179891 - 13179935
Alignment:
Q  75 agggacgccacactttctaatccaagaaagtgataagtctatgga 119  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  13179891 agggacgccacactttctaatcctagaaaatgataagtctatgga 13179935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 13184549 - 13184593
Alignment:
Q  75 agggacgccacactttctaatccaagaaagtgataagtctatgga 119  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  13184549 agggacgccacactttctaatcctagaaaatgataagtctatgga 13184593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 33757970 - 33758011
Alignment:
Q  75 agggacgccacactttctaatccaagaaagtgataagtctat 116  Q
    ||||||||||||||||||||||| ||||| ||||||||||||    
T  33757970 agggacgccacactttctaatcctagaaaatgataagtctat 33758011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 13956976 - 13957070
Alignment:
Q  87 ctttctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaacc 182  Q
    ||||||||||||||| ||  ||||||| |||||||||  |||||| |||||||||| | ||||||||||||||||||    |||| ||||||||||||    
T  13956976 ctttctaatccaagagagaatgataagcctatggatg--aggatcaccacaagaaa-aggatttcttgataagatcagttttggtccaatccagaacc 13957070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 15382027 - 15381933
Alignment:
Q  87 ctttctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaacc 182  Q
    ||||||||||||||| ||  ||||||| |||||||||  |||||| |||||||||| | ||||||||||||||||||    |||| ||||||||||||    
T  15382027 ctttctaatccaagagagaatgataagcctatggatg--aggatcaccacaagaaa-aggatttcttgataagatcagttttggtccaatccagaacc 15381933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 15387763 - 15387669
Alignment:
Q  87 ctttctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaacc 182  Q
    ||||||||||||||| ||  ||||||| |||||||||  |||||| |||||||||| | ||||||||||||||||||    |||| ||||||||||||    
T  15387763 ctttctaatccaagagagaatgataagcctatggatg--aggatcaccacaagaaa-aggatttcttgataagatcagttttggtccaatccagaacc 15387669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 13962709 - 13962782
Alignment:
Q  87 ctttctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatca 161  Q
    ||||||||||||||| ||  ||||||| |||||||||  |||||| |||||||||| | ||||||||||||||||||    
T  13962709 ctttctaatccaagagagaatgataagcctatggatg--aggatcaccacaagaaa-aggatttcttgataagatca 13962782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 26548289 - 26548241
Alignment:
Q  283 caagtatctcaatggacactaataaatt-aaaagacacctaatattatt 330  Q
    |||||| |||||||||| |||||||||| |||||||| |||||||||||    
T  26548289 caagtaactcaatggaccctaataaattaaaaagacatctaatattatt 26548241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 15410026 - 15409793
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15410026 tcggaagcaaattaagaataatgttgatggaaatggtgaaaagactaaaaa-tgaagaaatggaatggatagacagggacgccacactttctaatccaag 15409928  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15409927 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 15409828  T
Q  201 aatacacatatgtgtaaaattctataaaattcaac 235  Q
    ||||||||||||||||||||||||||| |||||||    
T  15409827 aatacacatatgtgtaaaattctataatattcaac 15409793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 6050147 - 6050419
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||| ||||| ||||| || ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6050147 tcggaagcaaattatgaatattgttggtgaaaatggtgaaaagactaaaaa-tgaagaaatggaatggatagacagggacgccacactttctaatccaag 6050245  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6050246 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctt 6050345  T
Q  201 aatacacatatgtgtaaaattctataaaattcaac-ttccttttatttcatagagaaacttacaatttatagag 273  Q
    ||||||||||||||||||||||||||| ||||||| ||  |||||||||||||| ||| |||||||||||||||    
T  6050346 aatacacatatgtgtaaaattctataatattcaactttttttttatttcatagaaaaagttacaatttatagag 6050419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 53 - 273
Target Start/End: Complemental strand, 33809548 - 33809331
Alignment:
Q  53 tgaaggaatggaatggatagacagggacgccacact--ttctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgattt 148  Q
    ||||| |||||||| |||||||| || |||||||||  ||| ||||||||||||  ||||||| | ||||||||||||||||||||||||||    ||||    
T  33809548 tgaagaaatggaatcgatagacaagggcgccacactctttccaatccaagaaagaatgataagccgatggatgcgaggatcgccacaagaaaagaaattt 33809449  T
Q  149 cttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataaaattcaacttccttttatttc 248  Q
          ||||| ||||||||||  ||||| |||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||  |||||||||    
T  33809448 ------aagattaaggatggtttgatccaaaaccacaagagacaagactctcaacacacatatgtgtaaaattctataaaattcaactt-attttatttc 33809356  T
Q  249 atagagaaacttacaatttatagag 273  Q
    ||||| |||||||| ||||||||||    
T  33809355 atagaaaaacttacgatttatagag 33809331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23732370 - 23732468
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaa 99  Q
    |||||||||||||| ||||| ||||| | |||||| |||  |||||||||||||||| ||| ||| ||||||||||||||||||||||||| |||||||    
T  23732370 tcggaagcaaattatgaatattgttggttgaaatggtgaggagactaaaaaatgaagaaatagaacggatagacagggacgccacactttcaaatccaa 23732468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 44792884 - 44792948
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaaccacaa 186  Q
    ||||||||||||||||||  || ||||||||||||||||| | ||||||||||||||||||||||    
T  44792884 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaaccacaa 44792948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 24808197 - 24808258
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacca 183  Q
    ||||||||||||||||||  || ||||||||||||||||| | |||||||||||||||||||    
T  24808197 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacca 24808258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 44794819 - 44794775
Alignment:
Q  75 agggacgccacactttctaatccaagaaagtgataagtctatgga 119  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  44794819 agggacgccacactttctaatcctagaaaatgataagtctatgga 44794775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 348
Target Start/End: Complemental strand, 1003243 - 1003138
Alignment:
Q  243 tatttcatagagaaacttacaatttatagagcacttgttgcaagtatctcaatggacactaataaattaaaagacacctaatattattctaaagaaaaga 342  Q
    ||||||| | ||||| ||| |||||||||||| |||| |  ||  | ||||| |||| ||||||||| |||| |||| |||||||| ||||||||||| |    
T  1003243 tatttcacaaagaaatttataatttatagagctcttgctctaatgaactcaaaggaccctaataaataaaaacacacttaatattaatctaaagaaaaca 1003144  T
Q  343 aataaa 348  Q
    ||||||    
T  1003143 aataaa 1003138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 18535362 - 18535423
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacca 183  Q
    ||||||||||||||||||  || |||||||||||||||||   |||||||||||||||||||    
T  18535362 gaggatcgccacaagaaacgtggtttcttgataagatcaatacatggttcaatccagaacca 18535423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 24806340 - 24806399
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaac 181  Q
    ||||||| ||||||||||  || ||||||||||||||||| | |||||||||||||||||    
T  24806340 gaggatcaccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaac 24806399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 31939114 - 31939075
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaa 162  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  31939114 gaggatcgccacaagaaacatggtttcttgataagatcaa 31939075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 9595360 - 9595597
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  9595360 tcggaagcaaattatgaatattgttggtggaaatggtgaaaagactaaaaaatgaagaaatgaaatggatagacagggacgccacactttctaatccaag 9595459  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9595460 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 9595559  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttc 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9595560 aatacacatatgtgtaaaattctataaaattcaacttc 9595597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 9646323 - 9646560
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  9646323 tcggaagcaaattatgaatattgttggtggaaatggtgaaaagactaaaaaatgaagaaatgaaatggatagacagggacgccacactttctaatccaag 9646422  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9646423 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 9646522  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttc 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9646523 aatacacatatgtgtaaaattctataaaattcaacttc 9646560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 32706568 - 32706295
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagacta-aaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaa 99  Q
    |||||||||||||||||||||||||| |||||||| |||||| |||| |||||||||| |||| ||| |||||| |||||| ||||||||||||||||||    
T  32706568 tcggaagcaaattaagaataatgttggtggaaatggtgaaaaaactagaaaaatgaagaaatgaaatagatagagagggacaccacactttctaatccaa 32706469  T
Q  100 gaaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctct 199  Q
    ||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32706468 gaaagtgataagtctatagatgcgaggattgccacaagaaatgtgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctct 32706369  T
Q  200 caatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatagag 273  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  32706368 taatacacatatgtgtaaaattctataaaattcaacttctttttatttcatagagaaagttacaatttatagag 32706295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 123 - 275
Target Start/End: Original strand, 5247437 - 5247589
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattc 222  Q
    ||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| || |||| |||||||||||    
T  5247437 gaggatctccacaaaaaatatgatttcttgataagatcaaggatgattcaatccagaaccataagagacaaagctctcaacactcatacgtgtaaaattc 5247536  T
Q  223 tataaaattcaacttccttttatttc-atagagaaacttacaatttatagagca 275  Q
    || | ||||||||||  |||||||||  |||  |||||||||||||||||||||    
T  5247537 tacacaattcaactt-gttttatttctttaggaaaacttacaatttatagagca 5247589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 16157101 - 16157057
Alignment:
Q  75 agggacgccacactttctaatccaagaaagtgataagtctatgga 119  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  16157101 agggacgccacactttctaatcctagaaaatgataagtctatgga 16157057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 21368645 - 21368689
Alignment:
Q  75 agggacgccacactttctaatccaagaaagtgataagtctatgga 119  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||||    
T  21368645 agggatgccacactttctaatcctagaaaatgataagtctatgga 21368689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 14575569 - 14575663
Alignment:
Q  87 ctttctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaacc 182  Q
    ||||||||||||||| ||  ||||||| |||||||||  |||||| |||||||||| | ||||||||||||||||||    |||| ||||||||||||    
T  14575569 ctttctaatccaagagagaatgataagcctatggatg--aggatcaccacaagaaa-aggatttcttgataagatcagttttggtccaatccagaacc 14575663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 14578845 - 14578939
Alignment:
Q  87 ctttctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaacc 182  Q
    ||||||||||||||| ||  ||||||| |||||||||  |||||| |||||||||| | ||||||||||||||||||    |||| ||||||||||||    
T  14578845 ctttctaatccaagagagaatgataagcctatggatg--aggatcaccacaagaaa-aggatttcttgataagatcagttttggtccaatccagaacc 14578939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 22707689 - 22707733
Alignment:
Q  75 agggacgccacactttctaatccaagaaagtgataagtctatgga 119  Q
    ||||||||| ||||||||||||| ||||| ||||||| |||||||    
T  22707689 agggacgcctcactttctaatcctagaaactgataagcctatgga 22707733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 4517 - 4788
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||    
T  4517 tcggaagcaaattatgaataatgttggtggaaatgatgaaaagactaaaaaatgtagaaatggaatggatagacagggatgccacactttctaatccaag 4616  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  4617 aaagtgataagtctatggatgcaaggatcgccgcaagaaatatgatttcttgataagatcaaggttggttcaatccagaaccacaagagacaaggctctc 4716  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatagag 273  Q
    ||||||||||||||||||||||||||| |||||||||  | |||||||||||| ||| |||||||||||||||    
T  4717 aatacacatatgtgtaaaattctataatattcaactt-atcttatttcatagaaaaagttacaatttatagag 4788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 4568478 - 4568208
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||     
T  4568478 tcggaagcaaattatgaatattgttggtggaaatggtgaaaagactaaaaaatgaagaaatg-aatggatagacagggacgccacactttctaatccaaa 4568380  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4568379 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgattttttgataagatcaagaatggttcaatccagaaccacaagagacaaagctctc 4568280  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatagag 273  Q
    |||||||||| || |||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||    
T  4568279 aatacacataagtataaaattctataaaattcaactt-tttttatttcatagagaaagttacaatttatagag 4568208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 244365 - 244598
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||| ||||| ||||| || ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  244365 tcggaagcaaattatgaatattgttggtgaaaatggtgaaaagactaaaaa-tgaagaaatggaatggatagacagggacgccacactttctaatccaag 244463  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  244464 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 244563  T
Q  201 aatacacatatgtgtaaaattctataaaattcaac 235  Q
    |||||||||||||||||||||||||||||||||||    
T  244564 aatacacatatgtgtaaaattctataaaattcaac 244598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 29950345 - 29950103
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||  ||||| ||||| ||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  29950345 tcggaagtgaattatgaatattgttggtggaaatgatgaaaagactaaaaaatgaagaaatgtaatggatagacagggacgccacactttctaatccaag 29950246  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29950245 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggttggttcaatccagaaccacaagagacaaagctctc 29950146  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttcctttt 243  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  29950145 aatacacatatgtgtaaaattctataatattcaacttcttttt 29950103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 29951983 - 29951741
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||  ||||| ||||| ||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  29951983 tcggaagtgaattatgaatattgttggtggaaatgatgaaaagactaaaaaatgaagaaatgtaatggatagacagggacgccacactttctaatccaag 29951884  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29951883 aaagtgataagtctatggatgcgaggatcaccacaagaaatatgatttcttgataagatcaaggttggttcaatccagaaccacaagagacaaagctctc 29951784  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttcctttt 243  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  29951783 aatacacatatgtgtaaaattctataatattcaacttcttttt 29951741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 11126378 - 11126478
Alignment:
Q  40 aaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaagaaagtgataagtctatggatgcgaggatcgccacaagaa 139  Q
    ||||||| ||||||  || ||||||||||| | ||||||| |||||||||||||||||||||||||| |||||||||||    ||||||| |||||||||    
T  11126378 aaagactcaaaaattgagaaatggaatggaaatacagggatgccacactttctaatccaagaaagtggtaagtctatgggattgaggatcaccacaagaa 11126477  T
Q  140 a 140  Q
    |    
T  11126478 a 11126478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 34596764 - 34596705
Alignment:
Q  291 tcaatggacactaataaattaaaagacacctaatattattctaaagaaaagaaataaatg 350  Q
    |||| |||| |||||||||||||||||||||||||||| ||||| ||||| |||||||||    
T  34596764 tcaaaggaccctaataaattaaaagacacctaatattactctaaggaaaacaaataaatg 34596705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 34597804 - 34597760
Alignment:
Q  144 gatttcttgataagatcaaggatggttcaatccagaaccacaagag 189  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  34597804 gatttcttgataagat-aaggatggttcaatccagaaccacaagag 34597760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 22821301 - 22821341
Alignment:
Q  79 acgccacactttctaatccaagaaagtgataagtctatgga 119  Q
    ||||||||||||||||||  ||||| |||||||||||||||    
T  22821301 acgccacactttctaatcttagaaaatgataagtctatgga 22821341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 796 - 1065
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| |||| | ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  796 tcggaagaaaattaagaataatgttgatggaaatggtgaaaagaataaagattgaagaaatggaatggatagacagggacgccacactttctaatccaag 895  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  896 aaagtgataagtctatggatgagaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagttctc 995  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttataga 272  Q
    ||||||||||||||||||||||||||| |||| ||||  ||||  ||||| | |||||||||||| ||||||    
T  996 aatacacatatgtgtaaaattctataatattccactt--tttttattcattgtgaaacttacaatatataga 1065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 6843 - 6576
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6843 tcggaagcaaattaagaagaatgttggtggaaatggtgaaaagactagaaaatgaagaaatggaatggatagacagggacgccacactttctaatccaag 6744  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    |||||||||||||||||||||||||||||||||||||||| |  | ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  6743 aaagtgataagtctatggatgcgaggatcgccacaagaaa-aaaaattcttgataagatcaagaatggttcaatccaaaaccacaagagacaaagctctc 6645  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatag 271  Q
    |||||||||| ||||||||||||||||||||||||||   ||||||||||| ||||||||||||| |||||    
T  6644 aatacacataagtgtaaaattctataaaattcaactt--gtttatttcataaagaaacttacaatatatag 6576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 9738 - 9471
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||    
T  9738 tcggaagcaaattaagaataatgttggtggaaatggtgaaaagactagaaaatgaagatatggaatggatagacagggacaccacactttctaatccaag 9639  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    |||||||||||||  |||||||||||||| |||||||||| |  | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  9638 aaagtgataagtcggtggatgcgaggatccccacaagaaa-agaaattcttgataagaacaagaatggttcaatccagaaccacaagagacaaagctctc 9540  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatag 271  Q
    |||||||||| |||||||||||||| |||||||||||   ||||||||||| ||||||||| ||| |||||    
T  9539 aatacacataagtgtaaaattctatcaaattcaactt--gtttatttcataaagaaacttaaaatatatag 9471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 17405 - 17138
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||    
T  17405 tcggaagcaaattaagaataatgttggtggaaatggtgaaaagactagaaaatgaagatatggaatggatagacagggacaccacactttctaatccaag 17306  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaaagctctc 200  Q
    |||||||||||||  |||||||||||||| |||||||||| |  | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  17305 aaagtgataagtcggtggatgcgaggatccccacaagaaa-agaaattcttgataagaacaagaatggttcaatccagaaccacaagagacaaagctctc 17207  T
Q  201 aatacacatatgtgtaaaattctataaaattcaacttccttttatttcatagagaaacttacaatttatag 271  Q
    |||||||||| |||||||||||||| |||||||||||   ||||||||||| ||||||||| ||| |||||    
T  17206 aatacacataagtgtaaaattctatcaaattcaactt--gtttatttcataaagaaacttaaaatatatag 17138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 22539 - 22730
Alignment:
Q  1 tcggaagcaaattaagaataatgttgatggaaatgatgaaaagactaaaaaatgaaggaatggaatggatagacagggacgccacactttctaatccaag 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22539 tcggaagcaaattaagaataatgttgatggaaatggtgaaaagactaaaaa-tgaagaaatggaatggatagacagggacgccacactttctaatccaag 22637  T
Q  101 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaa 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22638 aaagtgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggatggttcaatccagaaccacaagagacaa 22730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 226 - 373
Target Start/End: Original strand, 24429 - 24575
Alignment:
Q  226 aaaattcaacttccttttatttcatagagaaacttacaatttatagagcacttgttgcaagtatctcaatggacactaataaattaaaagacacctaata 325  Q
    ||||||| ||||||||| ||||||||  ||||||||||||| ||||||| |||| |  ||  | ||||| ||||||||||||||||||| ||||||| ||    
T  24429 aaaattctacttccttt-atttcataatgaaacttacaattcatagagctcttgctctaatgaactcaaaggacactaataaattaaaatacacctagta 24527  T
Q  326 ttattctaaagaaaagaaataaatgacatactagccttacaattattc 373  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24528 ttattctaaagaaaagaaataaatgacatactaaccttacaattattc 24575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 24311 - 24372
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacca 183  Q
    ||||||||||||||||||  || ||||||||||||||||| | |||||||||||||||||||    
T  24311 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacca 24372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 1491 - 1561
Alignment:
Q  166 tggttcaatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataaaattcaact 236  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1491 tggttcaatccagaaccataagagacaaagctctcaatacacataagtgtaaaattctataaaattcaact 1561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 10850 - 10911
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacca 183  Q
    ||||||||||||||||||  || ||||||||||||||||| | |||||||||||||||||||    
T  10850 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacca 10911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 6526 - 6465
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacca 183  Q
    ||||||||||||||||||  || ||||||||||||||||| | |||||||||||||||||||    
T  6526 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacca 6465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 141 - 202
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacca 183  Q
    ||||||||||||||||||  || ||||||||||||||||| | |||||||||||||||||||    
T  141 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacca 202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 374790 - 374851
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacca 183  Q
    ||||||||||||||||||  || ||||||||||||||||| | |||||||||||||||||||    
T  374790 gaggatcgccacaagaaacgtggtttcttgataagatcaatgcatggttcaatccagaacca 374851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 2199 - 2155
Alignment:
Q  75 agggacgccacactttctaatccaagaaagtgataagtctatgga 119  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  2199 agggacgccacactttctaatcctagaaaatgataagtctatgga 2155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 8768 - 8812
Alignment:
Q  75 agggacgccacactttctaatccaagaaagtgataagtctatgga 119  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  8768 agggacgccacactttctaatcctagaaaatgataagtctatgga 8812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 33780 - 33824
Alignment:
Q  75 agggacgccacactttctaatccaagaaagtgataagtctatgga 119  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  33780 agggacgccacactttctaatcctagaaaatgataagtctatgga 33824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 289037 - 288993
Alignment:
Q  75 agggacgccacactttctaatccaagaaagtgataagtctatgga 119  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  289037 agggacgccacactttctaatcctagaaaatgataagtctatgga 288993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 55486 - 55425
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacca 183  Q
    ||||||||||||||||||  || ||||||||| ||||||| | |||||||||||||||||||    
T  55486 gaggatcgccacaagaaacgtggtttcttgatgagatcaatgcatggttcaatccagaacca 55425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 241675 - 241614
Alignment:
Q  123 gaggatcgccacaagaaatatgatttcttgataagatcaa-ggatggttcaatccagaacca 183  Q
    ||||||| ||||||||||  || ||||||||||||||||| | |||||||||||||||||||    
T  241675 gaggatcaccacaagaaacgtggtttcttgataagatcaacgcatggttcaatccagaacca 241614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University