View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17998_low_18 (Length: 335)
Name: NF17998_low_18
Description: NF17998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17998_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 10 - 318
Target Start/End: Original strand, 22573520 - 22573828
Alignment:
| Q |
10 |
catcatcatccactggcagctcattcaaatcgaaatctcgaacaacatttaaccctaattcatgaggcaggttgttgttctcatctgtttcatcatcttc |
109 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22573520 |
catcatcttccactggcagctcattcaaatcgaaatctcgaacaacatttaaccctaattcatgaggcaggttgttgttcttatctgtttcatcatcttc |
22573619 |
T |
|
| Q |
110 |
accagtgttgttgttctcttcattatcatcattggaggcaggttgattggaagcttgtgaattttgaatgactaggccattcggaatctttaacctcgcc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22573620 |
accagtgttgttgttctcttcattatcatcattggaggcaggttgattggaagcttgtgaattttgaatgactaggccattcggaatctttaacctcgcc |
22573719 |
T |
|
| Q |
210 |
accaccttgttcttttgatctctcacaattgtttcatcaacacaatgttttaccagcacaccaccttgttctttgatcttcccattcttatccacattgc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22573720 |
accaccttgttcttttgatctctcacaattgtttcatcaacacaatgttttaccagcacaccaccttgttctttgatcttcccattcttatccacattgc |
22573819 |
T |
|
| Q |
310 |
ggcgaagtt |
318 |
Q |
| |
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||||||||| |
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| T |
22573820 |
ggcgaagtt |
22573828 |
T |
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