View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17998_low_21 (Length: 289)
Name: NF17998_low_21
Description: NF17998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17998_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 42460516 - 42460633
Alignment:
| Q |
16 |
atgtgacgaaaagcgagattatccttcgtaggaatgcgatcaagtaatagagcccaagagaacgccgctactttggaaggagccggactcttccaaatca |
115 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||| | ||| ||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
42460516 |
atgtgacgaaatgcgagattatccttcgtaggaatgcaatcaaggagtagtgcccaagagaacgtcactactttggaaggagccggactcttccaaatcg |
42460615 |
T |
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| Q |
116 |
aggtgaacaccccctcat |
133 |
Q |
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||| |||||||||||||| |
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| T |
42460616 |
aggagaacaccccctcat |
42460633 |
T |
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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 9936051 - 9935949
Alignment:
| Q |
31 |
agattatccttcgtaggaatgcgatcaagtaatagagcccaagagaacgccgctactttggaaggagccggactcttccaaatcaaggtgaacaccccct |
130 |
Q |
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|||||||||||||||||||| |||||||| | ||| | |||| |||| | |||||||||||||||||||||||||||||||| ||| ||| ||||||| |
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| T |
9936051 |
agattatccttcgtaggaatacgatcaagaagtagggaccaatagaatgtgactactttggaaggagccggactcttccaaatcgaggagaaaaccccct |
9935952 |
T |
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| Q |
131 |
cat |
133 |
Q |
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||| |
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| T |
9935951 |
cat |
9935949 |
T |
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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 1479887 - 1479958
Alignment:
| Q |
41 |
tcgtaggaatgcgatcaagtaatagagcccaagagaacgccgctactttggaaggagccggactcttccaaa |
112 |
Q |
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| T |
1479887 |
tcgtaggaatgcgatcaagtaataacaaccaagagaaggccactactttggaaggagccgaactcttccaaa |
1479958 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 2281863 - 2281794
Alignment:
| Q |
64 |
agagcccaagagaacgccgctactttggaaggagccggactcttccaaatcaaggtgaacaccccctcat |
133 |
Q |
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| T |
2281863 |
agagaccaagagaacaccactactttggatggagtcggactcttccaaagcaaggagaaaaccccctcat |
2281794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 112
Target Start/End: Complemental strand, 1033915 - 1033872
Alignment:
| Q |
69 |
ccaagagaacgccgctactttggaaggagccggactcttccaaa |
112 |
Q |
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| T |
1033915 |
ccaagagaacgccacaactttggaaggagccggactcttccaaa |
1033872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 2921387 - 2921448
Alignment:
| Q |
52 |
cgatcaagtaatagagcccaagagaacgccgctactttggaaggagccggactcttccaaat |
113 |
Q |
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|||||||| | || || ||||||||| ||| ||||||| || |||||||||||||||||||| |
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| T |
2921387 |
cgatcaagaagtaaagaccaagagaaggccactactttagacggagccggactcttccaaat |
2921448 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 36988698 - 36988601
Alignment:
| Q |
16 |
atgtgacgaaaagcgagattatccttcgtaggaatgcgatcaagtaatagagcccaagagaacgccgctactttggaaggagccggactcttccaaat |
113 |
Q |
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||||| |||| |||||||||||| || ||||| || |||||||| | || | ||| ||||||||| | ||||| || |||||||||||||||||||| |
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| T |
36988698 |
atgtggcgaatagcgagattatcttttgtagggattcgatcaaggagtaaggaccacgagaacgccaccactttcgatggagccggactcttccaaat |
36988601 |
T |
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