View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17998_low_26 (Length: 251)
Name: NF17998_low_26
Description: NF17998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17998_low_26 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 32185246 - 32185492
Alignment:
| Q |
9 |
gaagaatatcaacaaatgctatagttaatttacttgtctcttctatatgatgttacacccataacaagcagtgaaattctctcatttaannnnnnnggat |
108 |
Q |
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| T |
32185246 |
gaagaatatcaacaaatgctatagttaatttacttgtctcttctatatgatgttacacccataacaagcagtgaaattctctcaattaatttttttggat |
32185345 |
T |
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| Q |
109 |
tactttaaattttggagattcattcgagcactaaattttagttttatttgagaataattccagcttcataatttatattacaaaatatt----tacatac |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32185346 |
tactttaaattttggagattcattcgagcactaaattttagttttatttgagaataattccagcttcataatttatattacaaaatatttacatacatac |
32185445 |
T |
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| Q |
205 |
ccttttgattgtgaaaattaattnnnnnnntttagtccaatcaagaa |
251 |
Q |
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| T |
32185446 |
ccttttgattgtgaaaattaattaaaaaaatttagtccaatcaagaa |
32185492 |
T |
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