View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17998_low_27 (Length: 241)

Name: NF17998_low_27
Description: NF17998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17998_low_27
NF17998_low_27
[»] chr7 (25 HSPs)
chr7 (1-113)||(12910465-12910577)
chr7 (4-113)||(26826925-26827035)
chr7 (3-113)||(4035891-4036002)
chr7 (4-113)||(43664280-43664390)
chr7 (3-113)||(25191294-25191405)
chr7 (15-113)||(25472205-25472304)
chr7 (4-113)||(26827196-26827306)
chr7 (3-113)||(298101-298212)
chr7 (3-113)||(39857525-39857636)
chr7 (4-113)||(15000426-15000536)
chr7 (4-113)||(30139262-30139372)
chr7 (3-113)||(39957939-39958050)
chr7 (12-113)||(32451316-32451418)
chr7 (3-113)||(41065312-41065423)
chr7 (11-113)||(47085274-47085377)
chr7 (6-111)||(30825711-30825816)
chr7 (11-113)||(25341007-25341110)
chr7 (11-113)||(31012026-31012129)
chr7 (3-113)||(45203060-45203171)
chr7 (3-102)||(1999669-1999769)
chr7 (42-113)||(37371255-37371327)
chr7 (11-113)||(40233857-40233960)
chr7 (8-60)||(26169409-26169462)
chr7 (11-52)||(11341972-11342013)
chr7 (11-52)||(40725870-40725911)
[»] chr6 (10 HSPs)
chr6 (1-113)||(21515135-21515247)
chr6 (4-101)||(10683721-10683819)
chr6 (3-113)||(31745444-31745555)
chr6 (11-113)||(30019783-30019886)
chr6 (3-92)||(4147383-4147473)
chr6 (11-105)||(20837952-20838047)
chr6 (3-113)||(27825550-27825661)
chr6 (15-113)||(921614-921712)
chr6 (179-210)||(21515083-21515114)
chr6 (15-52)||(21254994-21255031)
[»] chr5 (32 HSPs)
chr5 (1-113)||(33232996-33233108)
chr5 (1-113)||(27737994-27738107)
chr5 (11-113)||(31905998-31906101)
chr5 (4-113)||(41741657-41741767)
chr5 (1-113)||(39236066-39236178)
chr5 (3-113)||(10900685-10900796)
chr5 (4-105)||(8957945-8958047)
chr5 (4-113)||(37046116-37046226)
chr5 (4-113)||(41039587-41039697)
chr5 (3-113)||(33386913-33387024)
chr5 (3-113)||(40979968-40980079)
chr5 (1-113)||(7071459-7071574)
chr5 (11-113)||(11017870-11017973)
chr5 (3-113)||(53076-53187)
chr5 (11-113)||(25256274-25256377)
chr5 (11-113)||(25320063-25320166)
chr5 (11-113)||(33082382-33082485)
chr5 (11-113)||(33115200-33115303)
chr5 (11-113)||(14083057-14083160)
chr5 (11-113)||(29541851-29541954)
chr5 (3-92)||(2526857-2526947)
chr5 (11-113)||(3260367-3260470)
chr5 (3-109)||(20069125-20069232)
chr5 (11-113)||(42663940-42664043)
chr5 (13-113)||(4295493-4295594)
chr5 (53-113)||(19357066-19357126)
chr5 (74-113)||(29367075-29367114)
chr5 (179-209)||(33233144-33233174)
chr5 (179-208)||(27737929-27737958)
chr5 (16-52)||(7178741-7178777)
chr5 (20-71)||(22482156-22482208)
chr5 (179-211)||(41039489-41039521)
[»] chr2 (22 HSPs)
chr2 (1-113)||(13896535-13896647)
chr2 (1-113)||(14037152-14037264)
chr2 (4-113)||(7474086-7474196)
chr2 (4-113)||(43341705-43341815)
chr2 (11-113)||(17481354-17481457)
chr2 (4-113)||(35457615-35457725)
chr2 (4-113)||(37640192-37640302)
chr2 (17-113)||(16765723-16765820)
chr2 (4-113)||(32496639-32496749)
chr2 (11-113)||(14380670-14380773)
chr2 (11-113)||(31686350-31686453)
chr2 (11-113)||(31787213-31787316)
chr2 (11-113)||(40255073-40255176)
chr2 (11-113)||(44282738-44282841)
chr2 (3-110)||(44003201-44003306)
chr2 (3-113)||(2442661-2442772)
chr2 (3-113)||(43695586-43695697)
chr2 (3-109)||(31047826-31047933)
chr2 (3-110)||(19860816-19860924)
chr2 (29-113)||(33597639-33597724)
chr2 (179-213)||(13896713-13896747)
chr2 (179-213)||(14037330-14037364)
[»] chr8 (25 HSPs)
chr8 (3-113)||(44240663-44240773)
chr8 (4-113)||(8417212-8417322)
chr8 (4-113)||(45275832-45275942)
chr8 (11-113)||(924590-924693)
chr8 (3-113)||(2026065-2026176)
chr8 (11-113)||(35801746-35801849)
chr8 (4-113)||(36821058-36821166)
chr8 (15-113)||(17073665-17073764)
chr8 (15-113)||(17574506-17574605)
chr8 (11-113)||(193949-194052)
chr8 (11-113)||(721553-721656)
chr8 (11-113)||(882660-882763)
chr8 (3-113)||(26575779-26575890)
chr8 (11-113)||(30211147-30211250)
chr8 (11-113)||(34773859-34773962)
chr8 (3-110)||(23018301-23018409)
chr8 (11-113)||(629277-629380)
chr8 (11-113)||(30982640-30982743)
chr8 (11-90)||(13016236-13016316)
chr8 (23-102)||(2598505-2598585)
chr8 (56-113)||(11071082-11071139)
chr8 (6-56)||(22936059-22936110)
chr8 (53-96)||(22934240-22934283)
chr8 (16-71)||(3619164-3619220)
chr8 (16-52)||(42600486-42600522)
[»] chr1 (34 HSPs)
chr1 (1-113)||(46408027-46408139)
chr1 (4-113)||(6706677-6706787)
chr1 (13-113)||(16342898-16342999)
chr1 (4-109)||(7385774-7385883)
chr1 (11-113)||(47655135-47655238)
chr1 (4-113)||(4484662-4484772)
chr1 (4-113)||(50031388-50031498)
chr1 (3-113)||(11829567-11829678)
chr1 (3-113)||(31099893-31100004)
chr1 (3-113)||(41512701-41512811)
chr1 (3-113)||(46033169-46033279)
chr1 (3-113)||(42137128-42137240)
chr1 (11-113)||(5271036-5271139)
chr1 (11-113)||(15353723-15353826)
chr1 (11-113)||(26821900-26822003)
chr1 (3-113)||(27576690-27576801)
chr1 (11-113)||(36495910-36496013)
chr1 (11-113)||(38627782-38627885)
chr1 (3-113)||(45179882-45179993)
chr1 (11-113)||(50978356-50978459)
chr1 (11-113)||(51487905-51488008)
chr1 (11-113)||(11050558-11050662)
chr1 (19-113)||(1763271-1763366)
chr1 (11-113)||(26999821-26999924)
chr1 (11-113)||(38843880-38843983)
chr1 (3-113)||(50521047-50521157)
chr1 (11-101)||(7592747-7592838)
chr1 (4-75)||(13509404-13509477)
chr1 (44-113)||(24076062-24076132)
chr1 (24-109)||(44740674-44740760)
chr1 (1-109)||(35606871-35606980)
chr1 (11-113)||(49431183-49431285)
chr1 (15-68)||(40709152-40709205)
chr1 (20-71)||(35569299-35569351)
[»] chr4 (26 HSPs)
chr4 (6-113)||(56561042-56561149)
chr4 (4-113)||(30417834-30417944)
chr4 (3-113)||(50523308-50523419)
chr4 (4-113)||(28963297-28963407)
chr4 (4-113)||(29385485-29385595)
chr4 (3-113)||(26459535-26459646)
chr4 (4-113)||(53663074-53663184)
chr4 (3-113)||(16202572-16202683)
chr4 (3-113)||(39733368-39733479)
chr4 (4-113)||(45106330-45106440)
chr4 (4-113)||(22605798-22605906)
chr4 (4-113)||(38768352-38768458)
chr4 (12-113)||(53403565-53403667)
chr4 (11-109)||(5937359-5937458)
chr4 (3-113)||(51833498-51833609)
chr4 (3-113)||(28912163-28912271)
chr4 (11-113)||(24035631-24035734)
chr4 (11-113)||(24247110-24247213)
chr4 (11-113)||(39382449-39382552)
chr4 (11-113)||(49128221-49128324)
chr4 (33-113)||(48407491-48407572)
chr4 (24-113)||(36212792-36212882)
chr4 (15-113)||(8510705-8510804)
chr4 (66-113)||(49724378-49724425)
chr4 (4-50)||(49724332-49724377)
chr4 (179-213)||(56561215-56561249)
[»] scaffold0068 (1 HSPs)
scaffold0068 (4-113)||(38262-38372)
[»] chr3 (32 HSPs)
chr3 (3-113)||(30811260-30811371)
chr3 (11-109)||(39252041-39252140)
chr3 (4-113)||(48253932-48254042)
chr3 (4-113)||(11264250-11264360)
chr3 (4-113)||(33025219-33025329)
chr3 (6-113)||(42275086-42275199)
chr3 (3-113)||(33329395-33329506)
chr3 (4-113)||(45151161-45151275)
chr3 (4-113)||(48181618-48181728)
chr3 (3-113)||(39267096-39267207)
chr3 (18-113)||(42074901-42074997)
chr3 (3-113)||(50392256-50392367)
chr3 (3-113)||(44610270-44610380)
chr3 (4-113)||(51230257-51230367)
chr3 (3-111)||(41536327-41536436)
chr3 (11-113)||(1528071-1528174)
chr3 (11-113)||(38469746-38469849)
chr3 (11-113)||(47140780-47140883)
chr3 (11-113)||(47697255-47697358)
chr3 (11-113)||(51124800-51124903)
chr3 (11-113)||(28884238-28884341)
chr3 (11-113)||(52693105-52693208)
chr3 (10-113)||(44329194-44329298)
chr3 (3-113)||(40237808-40237919)
chr3 (3-110)||(45488541-45488649)
chr3 (4-79)||(53686555-53686631)
chr3 (15-113)||(5104739-5104838)
chr3 (12-90)||(40244059-40244138)
chr3 (179-209)||(31813925-31813955)
chr3 (11-53)||(46798717-46798759)
chr3 (19-52)||(49526785-49526818)
chr3 (20-71)||(23496277-23496329)
[»] scaffold0097 (1 HSPs)
scaffold0097 (4-113)||(32499-32609)
[»] scaffold0184 (1 HSPs)
scaffold0184 (3-113)||(9212-9323)
[»] scaffold0006 (1 HSPs)
scaffold0006 (11-104)||(92103-92199)
[»] scaffold0808 (1 HSPs)
scaffold0808 (4-113)||(4646-4757)
[»] scaffold0069 (1 HSPs)
scaffold0069 (11-104)||(17377-17474)
[»] scaffold0003 (1 HSPs)
scaffold0003 (3-110)||(301706-301814)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 12910465 - 12910577
Alignment:
Q  1 tctatttagttatgtccattttagtaattatacattcaaaagcaattttgataaaactatctaaacaacattcagtttgtttaatcaattctgcattatt 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12910465 tctatttagctatgtccattttagtaattatacattcaaaagcaattttgataaaactatccaaacaacattcagtttgtttaatcaattctgcattatt 12910564  T
Q  101 gtatccaaacata 113  Q
     ||||||||||||    
T  12910565 atatccaaacata 12910577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 26826925 - 26827035
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  26826925 atttagctatgtccattttagtaattatacattcaaaagcaattttgataaaaactatccaaacaacattcagtttgtttaatcaattctgcattattgt 26827024  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  26827025 atccaaacata 26827035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 4035891 - 4036002
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||||||||    
T  4035891 tatttagctatgtctattttagtaattatacattcaaaagcaattttgattaaaactatccaaacaacatttagtttgtttaatcaattctacattattg 4035990  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  4035991 tatccaaacata 4036002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 43664390 - 43664280
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| || ||||||||||||||| |||||||||||||||||    
T  43664390 atttagctatgtccattttagtaattatacattcaaaagcaattttgataaaaactatccaaataatattcagtttgtttaaacaattctgcattattgt 43664291  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  43664290 atccaaacata 43664280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 25191405 - 25191294
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||| ||||||||    
T  25191405 tatttagctatgtgcattttagtaattatacatttaaaagcaattttgatcaaaactatccaaacaacattcattttgtttaatcaattctacattattg 25191306  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  25191305 tatccaaacata 25191294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 25472304 - 25472205
Alignment:
Q  15 tccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaacata 113  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25472304 tccattttagtaattatatattcaaaagcaattttgataaaaactatccaaacaacattcagtttgtttaatcaattatgcattattgtatccaaacata 25472205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 26827306 - 26827196
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||||| ||||||    
T  26827306 atttagctatgtccattttagtaattgtacattcaaaagcaattttgataaaaactatccaaacaactttcaatttgtttaatcaattctgcaatattgt 26827207  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  26827206 atccaaacata 26827196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 298212 - 298101
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | ||||||||||||||  |||| |||    
T  298212 tatttagctatgtccattttagtaattatacattcaaaagcaattttgatcaaaactatctaaacaacatccattctgtttaatcaattccacatttttg 298113  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  298112 tatccaaacata 298101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 39857525 - 39857636
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||||||||| ||||| | ||||||    
T  39857525 tatttagctatgtccattttagtaattatacattcaaaagcaattttgatcaaaactatccaaacgacattcattttgtttaatcgattctacgttattg 39857624  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  39857625 tatccaaacata 39857636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 15000426 - 15000536
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||| | ||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |    
T  15000426 atttagctatgtctagtttagtaattatacattcaaaagcaattttgttaaaaactatccaaacaacattcagtttgtttaatcaattctgcattatttt 15000525  T
Q  103 atccaaacata 113  Q
    || ||||||||    
T  15000526 attcaaacata 15000536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 30139372 - 30139262
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||  ||| ||||||||||||||||||||||| || ||||||||    
T  30139372 atttagctatgtccattttagtaattatacattcaaaatcaattttgataaaaactatccgaacgacattcagtttgtttaatcaattatgaattattgt 30139273  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  30139272 atccaaacata 30139262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 39958050 - 39957939
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| |||||  |||||||||||||||||||||||| |||||||||| ||||||||| |||| ||||| ||||||||||||||||||| ||||||||    
T  39958050 tatttagctatgttaattttagtaattatacattcaaaaacaattttgatcaaaactatccaaacgacatttagtttgtttaatcaattctacattattg 39957951  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  39957950 tatccaaacata 39957939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 32451316 - 32451418
Alignment:
Q  12 atgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaac 110  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| | ||||||||||||| | |||||||||||| ||||    
T  32451316 atgtccattttagtaattatacattcaaaagcaattttgatcaaaactatttaaacaacattcattatgtttaatcaattttacattattgtatcgaaac 32451415  T
Q  111 ata 113  Q
    |||    
T  32451416 ata 32451418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 41065312 - 41065423
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | | ||||||||||||| | |||| |    
T  41065312 tatttagctatgtccattttagtaattatacattcaaaagcaattttgatcaaaactatccaaacaacattcattctctttaatcaattctacgttatcg 41065411  T
Q  102 tatccaaacata 113  Q
    ||| ||||||||    
T  41065412 tattcaaacata 41065423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 47085377 - 47085274
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | || | | ||||||||||| ||||||||||||||||||    
T  47085377 tatgtccattttagtaattatacattcaaaagcaattttgatcaaaactatccaaacaacctccactctatttaatcaattttgcattattgtatccaaa 47085278  T
Q  110 cata 113  Q
    ||||    
T  47085277 cata 47085274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 30825711 - 30825816
Alignment:
Q  6 ttagttatgtccattttagtaattatacattcaaaagcaattttgataaaact-atctaaacaacattcagtttgtttaatcaattctgcattattgtat 104  Q
    |||| |||||| ||||||||| ||||||||||||||||||||||||||||| | ||| ||| ||||||||| ||||||||||||||||||||||||||||    
T  30825711 ttagctatgtctattttagta-ttatacattcaaaagcaattttgataaaaattatccaaataacattcagattgtttaatcaattctgcattattgtat 30825809  T
Q  105 ccaaaca 111  Q
    |||||||    
T  30825810 ccaaaca 30825816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 25341110 - 25341007
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  25341110 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 25341011  T
Q  110 cata 113  Q
    ||||    
T  25341010 cata 25341007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 31012129 - 31012026
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  31012129 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 31012030  T
Q  110 cata 113  Q
    ||||    
T  31012029 cata 31012026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 45203060 - 45203171
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    |||| |||||||| ||||| ||||||||||  | ||||| |||||||||| ||||||||| |||||||||||| || |||||||||||||||||||||||    
T  45203060 tattaagttatgttcatttaagtaattatatttccaaaaccaattttgatcaaaactatccaaacaacattcaattggtttaatcaattctgcattattg 45203159  T
Q  102 tatccaaacata 113  Q
    |||| |||||||    
T  45203160 tatctaaacata 45203171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 1999769 - 1999669
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||  |||||||||| | | | ||||||||||||| ||||||||    
T  1999769 tatttagctatgtccattttagtaattatacattcaaaagcaagtttgatcaaaactattcaaacaacatttattctatttaatcaattctacattattg 1999670  T
Q  102 t 102  Q
    |    
T  1999669 t 1999669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 37371255 - 37371327
Alignment:
Q  42 gcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaacata 113  Q
    ||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37371255 gcaattttgataaaaactatccaaacaacattcactttgtttaatcaattctgcattattgtatccaaacata 37371327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 40233857 - 40233960
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    ||||||||||| |||||| ||||||||||||  ||||||||| ||||||||| |||||||||||| |  |||||||||||| | | |||||||||| |||    
T  40233857 tatgtccatttaagtaatcatacattcaaaaataattttgatcaaaactatccaaacaacattcattccgtttaatcaattatacgttattgtatctaaa 40233956  T
Q  110 cata 113  Q
    ||||    
T  40233957 cata 40233960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 26169462 - 26169409
Alignment:
Q  8 agttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactat 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26169462 agttatgtccattttagtaattatacattcaaaagcaattttgatcaaaactat 26169409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 11341972 - 11342013
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat 52  Q
    |||||| |||||||||||||||||||||||| ||||||||||    
T  11341972 tatgtctattttagtaattatacattcaaaaacaattttgat 11342013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 40725870 - 40725911
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat 52  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||    
T  40725870 tatgtacattttaataattatacattcaaaaacaattttgat 40725911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 21515247 - 21515135
Alignment:
Q  1 tctatttagttatgtccattttagtaattatacattcaaaagcaattttgataaaactatctaaacaacattcagtttgtttaatcaattctgcattatt 100  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21515247 tctatttagctatgtccatattagtaattatacattcaaaagcaattttgataaaactatccaaacaacattcagtttgtttaatcaattctgcattatt 21515148  T
Q  101 gtatccaaacata 113  Q
    |||||||||||||    
T  21515147 gtatccaaacata 21515135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 10683721 - 10683819
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  10683721 atttagctatgtccattttagtaattatacattcaaaagaaattttgataaaaactatccaaacaacattcagtttgtttaattaattctgcattattg 10683819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 31745555 - 31745444
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| | | ||||||||||||| | | |||| |    
T  31745555 tatttagctatgtccattttagtaattatacattcaaaagcaattttgatcaaaactatccaaacaacatttattctgtttaatcaattatacgttatcg 31745456  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  31745455 tatccaaacata 31745444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 30019783 - 30019886
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  30019783 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 30019882  T
Q  110 cata 113  Q
    ||||    
T  30019883 cata 30019886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 4147383 - 4147473
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattct 92  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||| | |||||||||||||||    
T  4147383 tatttagttatgtctattttagtaattatacattcaagagcaattttgatcaaaactatccaaacaacattcattctgtttaatcaattct 4147473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 20838047 - 20837952
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatc 105  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||| |||  |||||||||||| ||| ||||||||||| ||||||||||||||    
T  20838047 tatgtccattttagtaattatatgttcaaaagcaattttgatcaaaattattcaaacaacattcaatttatttaatcaattatgcattattgtatc 20837952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 27825550 - 27825661
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| ||||||||||||| |||||||||||| ||||| ||||||||| ||||||||| |||||||||||| | | |||||||||||||  ||||| |    
T  27825550 tatttagctatgtccattttaataattatacatttaaaagtaattttgatcaaaactatccaaacaacattcattctatttaatcaattctatattatcg 27825649  T
Q  102 tatccaaacata 113  Q
    | ||||||||||    
T  27825650 tgtccaaacata 27825661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 921614 - 921712
Alignment:
Q  15 tccattttagtaattatacattcaaaagcaattttgataaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaacata 113  Q
    ||||||||| |||||||||||||||||  ||||||||| |||||||| ||||||||| || | |||||||||||| || | ||||||||||||||||||    
T  921614 tccattttaataattatacattcaaaaataattttgatcaaactatccaaacaacatccattctgtttaatcaatcctactttattgtatccaaacata 921712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 210
Target Start/End: Complemental strand, 21515114 - 21515083
Alignment:
Q  179 attctatctaaagctaaaccaaacacacacta 210  Q
    ||||||||||||||||||||||||||||||||    
T  21515114 attctatctaaagctaaaccaaacacacacta 21515083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 21255031 - 21254994
Alignment:
Q  15 tccattttagtaattatacattcaaaagcaattttgat 52  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  21255031 tccattttggtaattatactttcaaaagcaattttgat 21254994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 33232996 - 33233108
Alignment:
Q  1 tctatttagttatgtccattttagtaattatacattcaaaagcaattttgataaaactatctaaacaacattcagtttgtttaatcaattctgcattatt 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  33232996 tctatttagctatgtccattttagtaattatacattcaaaagcaattttgataaaactatccaaacaacattcagtttgtttaatcgattctgcattatt 33233095  T
Q  101 gtatccaaacata 113  Q
    |||||||||||||    
T  33233096 gtatccaaacata 33233108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 27738107 - 27737994
Alignment:
Q  1 tctatttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattat 99  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  27738107 tctatttagctatgtccattttagtaattatacattcaaaagcaattttgataaaaactatccaaacaacattcagtttgtttaatcaattctgcattat 27738008  T
Q  100 tgtatccaaacata 113  Q
    ||||||||||||||    
T  27738007 tgtatccaaacata 27737994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 31905998 - 31906101
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31905998 tatgtccattttagtaattatacattcaaaagcaattttgataaaaactatccaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 31906097  T
Q  110 cata 113  Q
    ||||    
T  31906098 cata 31906101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 41741767 - 41741657
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  41741767 atttagctatgtccattttagtaattatacattcaaaagcaattttaataaaaactatccaaacaacattcagtttgtttaatcaattctgcattattgt 41741668  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  41741667 atccaaacata 41741657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 39236178 - 39236066
Alignment:
Q  1 tctatttagttatgtccattttagtaattatacattcaaaagcaattttgataaaactatctaaacaacattcagtttgtttaatcaattctgcattatt 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  39236178 tctatttagctatgtccattttagtaattatacattcaaaagcaattttaataaaattatccaaacaacattcagtttgtttaatcaattctgcattatt 39236079  T
Q  101 gtatccaaacata 113  Q
     ||| ||||||||    
T  39236078 atattcaaacata 39236066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 10900685 - 10900796
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| |||||||||||||||||||||||||||||||  ||||||||| |||| |||| |||||||||||||||||||||||||||| ||||||||||    
T  10900685 tatttagctatgtccattttagtaattatacattcaaaattaattttgatcaaaattatccaaacaacattcagtttgtttaatcaattatgcattattg 10900784  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  10900785 tatccaaacata 10900796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 8958047 - 8957945
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  8958047 atttagctatatctattttagtaattatacattcaaaagcaattttgataaaaactatccaaacaacattcagtttgtttaatcaattctgcattattgt 8957948  T
Q  103 atc 105  Q
    |||    
T  8957947 atc 8957945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 37046116 - 37046226
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaact-atctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||||||||||||    
T  37046116 atttagctatgtctattttagtaattatacattcaaaagcaattttgatcaaaatcatccaaacaacattcagtttgtttaatcaattctgcattattgt 37046215  T
Q  103 atccaaacata 113  Q
    || ||||||||    
T  37046216 attcaaacata 37046226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 41039697 - 41039587
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||| |||| ||||| |||||||||||| || ||||||||||||||||||||||||    
T  41039697 atttagttatgttcattttagtaattacacattcaaaagcaattttgaaaaaaactatccaaacaacattcatttcgtttaatcaattctgcattattgt 41039598  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  41039597 atccaaacata 41039587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 33387024 - 33386913
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| | | ||||||||||||| ||||||||    
T  33387024 tatttagctatgtccattttagtaattatacattcaaaaacaattttgatcaaaactatccaaacaacattcattctatttaatcaattctacattattg 33386925  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  33386924 tatccaaacata 33386913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 40979968 - 40980079
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| | ||||||||||||||| ||||||||||    
T  40979968 tatttagctatgtccattttagtaattatacattcaaaatcaattttgatcaaaactatccaaacaacatttaatttgtttaatcaattttgcattattg 40980067  T
Q  102 tatccaaacata 113  Q
    |||||| |||||    
T  40980068 tatccatacata 40980079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 7071574 - 7071459
Alignment:
Q  1 tctatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattct--gcatt 97  Q
    ||||||||  |||||||||||| |||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |  |||||    
T  7071574 tctatttacctatgtccattttggtaattatacattcaaaaacaattttgatcaaaactatccaaacaacattcagtttgtttaatcaattatgcgcatt 7071475  T
Q  98 attgtatccaaacata 113  Q
    ||||||||||||||||    
T  7071474 attgtatccaaacata 7071459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 11017973 - 11017870
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||||||||||||||  |||||||||||| |||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  11017973 tatgtccattttagtaaccatacattcaaaaacaattttgatgaaaactatccaaacaacattcagtttgtctaatcaattctgcattattatatccaaa 11017874  T
Q  110 cata 113  Q
    ||||    
T  11017873 cata 11017870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 53187 - 53076
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||||| |||||||| |||| | ||||| || |    
T  53187 tatttagttatgtccattttagtaattatactttcaaaagcaattttgatcaaaaccatccaaacaacattcaatttgtttattcaactgtgcatcatcg 53088  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  53087 tatccaaacata 53076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 25256377 - 25256274
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||  | |  |||||||||||||| ||||||||||||||||    
T  25256377 tatgtccattttagtaattatacattcaaaaacaattttgatcaaaactatctaaacaacatcaattccgtttaatcaattctacattattgtatccaaa 25256278  T
Q  110 cata 113  Q
    ||||    
T  25256277 cata 25256274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 25320166 - 25320063
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||  | |  |||||||||||||| ||||||||||||||||    
T  25320166 tatgtccattttagtaattatacattcaaaaacaattttgatcaaaactatctaaacaacatcaattccgtttaatcaattctacattattgtatccaaa 25320067  T
Q  110 cata 113  Q
    ||||    
T  25320066 cata 25320063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 33082485 - 33082382
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| || | | ||||||||||||| ||||||||||| ||||    
T  33082485 tatgtccattttagtaattatacattcaaaagcaattttgatcaaaactatccaaacaacatccattctatttaatcaattctacattattgtattcaaa 33082386  T
Q  110 cata 113  Q
    ||||    
T  33082385 cata 33082382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 33115200 - 33115303
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | ||||||||||||||||||||||||||||||||    
T  33115200 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgtatccaaa 33115299  T
Q  110 cata 113  Q
    ||||    
T  33115300 cata 33115303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 14083057 - 14083160
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  14083057 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 14083156  T
Q  110 cata 113  Q
    ||||    
T  14083157 cata 14083160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 29541954 - 29541851
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  29541954 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 29541855  T
Q  110 cata 113  Q
    ||||    
T  29541854 cata 29541851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 2526857 - 2526947
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattct 92  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||| | |||||||||||||||    
T  2526857 tatttagttatgtctattttagtaattatacattcaagagcaattttgatcaaaactatccaaacaacattcattctgtttaatcaattct 2526947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 3260470 - 3260367
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||| ||||||| |||||||    
T  3260470 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgtattattgcatccaaa 3260371  T
Q  110 cata 113  Q
    ||||    
T  3260370 cata 3260367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 20069232 - 20069125
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    |||||| |||||||  |||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||||   ||||||||||||| ||||||||||    
T  20069232 tatttaattatgtcggttttagtacttatacattcaaaaacaattttgatcaaaactatccaaacaacattcaacgtgtttaatcaattttgcattattg 20069133  T
Q  102 tatccaaa 109  Q
    ||||||||    
T  20069132 tatccaaa 20069125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 42663940 - 42664043
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||  ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  42663940 tatgtctattttggtaattatacattcaaaaataattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 42664039  T
Q  110 cata 113  Q
    ||||    
T  42664040 cata 42664043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 4295493 - 4295594
Alignment:
Q  13 tgtccattttagtaattatacattcaaaagcaattttgataaaac-tatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaaca 111  Q
    |||||||||||||||||||||||||||||  ||||||||| |||| |||| |||||||||||| ||||||||||||||| |  |||||||||| ||||||    
T  4295493 tgtccattttagtaattatacattcaaaaataattttgatcaaacatatccaaacaacattcaatttgtttaatcaattttaaattattgtattcaaaca 4295592  T
Q  112 ta 113  Q
    ||    
T  4295593 ta 4295594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 19357066 - 19357126
Alignment:
Q  53 aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaacata 113  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19357066 aaaactatacaaacaacattcagtttgtttaatcaattctgcattattgtatccaaacata 19357126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 29367114 - 29367075
Alignment:
Q  74 agtttgtttaatcaattctgcattattgtatccaaacata 113  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  29367114 agtttgtttaatcaaatctacattattgtatccaaacata 29367075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 209
Target Start/End: Original strand, 33233144 - 33233174
Alignment:
Q  179 attctatctaaagctaaaccaaacacacact 209  Q
    |||||||||||||||||||||||||||||||    
T  33233144 attctatctaaagctaaaccaaacacacact 33233174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 208
Target Start/End: Complemental strand, 27737958 - 27737929
Alignment:
Q  179 attctatctaaagctaaaccaaacacacac 208  Q
    ||||||||||||||||||||||||||||||    
T  27737958 attctatctaaagctaaaccaaacacacac 27737929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 7178741 - 7178777
Alignment:
Q  16 ccattttagtaattatacattcaaaagcaattttgat 52  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  7178741 ccattttggtaattatactttcaaaagcaattttgat 7178777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 22482156 - 22482208
Alignment:
Q  20 tttagtaattatacattcaaaagcaattttga-taaaactatctaaacaacat 71  Q
    |||||| ||||||||||||||| ||||||||| | |||||||| |||||||||    
T  22482156 tttagtcattatacattcaaaatcaattttgattcaaactatccaaacaacat 22482208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 41039521 - 41039489
Alignment:
Q  179 attctatctaaagctaaaccaaacacacactaa 211  Q
    ||||||||||||||| |||||||||||||||||    
T  41039521 attctatctaaagctgaaccaaacacacactaa 41039489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 13896535 - 13896647
Alignment:
Q  1 tctatttagttatgtccattttagtaattatacattcaaaagcaattttgataaaactatctaaacaacattcagtttgtttaatcaattctgcattatt 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  13896535 tctatttagctatgtccattttagtaattatacattcaaaagcaattttgataaaactatccaaacaacattcagtttgtttaatcaattctacattatt 13896634  T
Q  101 gtatccaaacata 113  Q
    |||||||||||||    
T  13896635 gtatccaaacata 13896647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 14037152 - 14037264
Alignment:
Q  1 tctatttagttatgtccattttagtaattatacattcaaaagcaattttgataaaactatctaaacaacattcagtttgtttaatcaattctgcattatt 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  14037152 tctatttagctatgtccattttagtaattatacattcaaaagcaattttgataaaactatccaaacaacattcagtttgtttaatcaattctacattatt 14037251  T
Q  101 gtatccaaacata 113  Q
    |||||||||||||    
T  14037252 gtatccaaacata 14037264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 7474086 - 7474196
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||    
T  7474086 atttagctatgtccattttagtaattatacattcaaaagcaattttgataaaaactatccaaacaacattcattttgtttaatcaattctgcattattgt 7474185  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  7474186 atccaaacata 7474196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 43341815 - 43341705
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||    
T  43341815 atttagctatgtccattttagtaattatacattcaaaagcaattttgataaaaactatccaaacaacatttagtttgtttaatcaattctgcattattgt 43341716  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  43341715 atccaaacata 43341705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 17481354 - 17481457
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17481354 tatgtccattttagtacttatacattcaaaagcaattttgataaaaactatccaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 17481453  T
Q  110 cata 113  Q
    ||||    
T  17481454 cata 17481457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 35457725 - 35457615
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||||||    
T  35457725 atttagctatgtccattttagtaattatacattcaaaagcaattttaataaaaactatccaaacaacattcagtttgtttaaacaattctgcattattgt 35457626  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  35457625 atccaaacata 35457615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 37640302 - 37640192
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| |||| ||||||||||||||| |||||||||||    
T  37640302 atttagctatgtccattttagtaattatacattcaaaatcaattttgataaaaactatccaaacaacgttcattttgtttaatcaattatgcattattgt 37640203  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  37640202 atccaaacata 37640192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 16765820 - 16765723
Alignment:
Q  17 cattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaacata 113  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||| |||||||||||| |||||||    
T  16765820 cattttagtaattatacattcaaaagcaattttgatcaaaactatccaaataacattcagtttgtttaatcaattctacattattgtatctaaacata 16765723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 32496749 - 32496639
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||| |||||||||||||||||||||||| |||||| ||||||| ||||  ||||||||||||||||| |||||||||| |||||||||||    
T  32496749 atttagctatgtctattttagtaattatacattcaaaaacaatttcgataaaaactattcaaacaacattcagtttgcttaatcaattatgcattattgt 32496650  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  32496649 atccaaacata 32496639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 14380670 - 14380773
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  14380670 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 14380769  T
Q  110 cata 113  Q
    ||||    
T  14380770 cata 14380773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 31686453 - 31686350
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  31686453 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 31686354  T
Q  110 cata 113  Q
    ||||    
T  31686353 cata 31686350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 31787213 - 31787316
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  31787213 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 31787312  T
Q  110 cata 113  Q
    ||||    
T  31787313 cata 31787316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 40255073 - 40255176
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  40255073 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 40255172  T
Q  110 cata 113  Q
    ||||    
T  40255173 cata 40255176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 44282738 - 44282841
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  44282738 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 44282837  T
Q  110 cata 113  Q
    ||||    
T  44282838 cata 44282841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 44003201 - 44003306
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| ||||||| |||||||||||||||||||||||  ||||||||| |||| ||||||||||   || | ||||||||||||||||||||||||||    
T  44003201 tatttagctatgtccgttttagtaattatacattcaaaattaattttgatcaaaaatatctaaaca---tttaatttgtttaatcaattctgcattattg 44003297  T
Q  102 tatccaaac 110  Q
    |||||||||    
T  44003298 tatccaaac 44003306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 2442772 - 2442661
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| ||||||||||||| |||||||||||||||||  ||||||||| ||||||||| |||||||||||  | |||||||||||||||   |||| |    
T  2442772 tatttagctatgtccattttaataattatacattcaaaaataattttgatcaaaactatccaaacaacattctttctgtttaatcaattctatgttatcg 2442673  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  2442672 tatccaaacata 2442661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 43695586 - 43695697
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    |||||||  |||| ||||||||||||||||||||||||| ||||||||||  |||||||| |||||||||| | | | ||||||||||||| |||||||     
T  43695586 tatttagcaatgttcattttagtaattatacattcaaaaacaattttgatcgaaactatccaaacaacatttattctctttaatcaattctacattatta 43695685  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  43695686 tatccaaacata 43695697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 31047933 - 31047826
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgataaa-actatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    |||||| |||||||||||||| |||||||| |||||||| || |||||||||| |  ||| |||||||||  | ||||||||||||||| ||||||||||    
T  31047933 tatttaattatgtccattttaataattataaattcaaaaacatttttgataaacatcatccaaacaacatctattttgtttaatcaattatgcattattg 31047834  T
Q  102 tatccaaa 109  Q
    ||||||||    
T  31047833 tatccaaa 31047826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 19860816 - 19860924
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| |||||| ||||||||||||||||||| |||| |||||||||| |||| |||| | |  ||||| |||  |||||||||||| ||||||||||    
T  19860816 tatttagctatgtctattttagtaattatacatttaaaaacaattttgatcaaaaatatccacatgacatttagtgggtttaatcaattttgcattattg 19860915  T
Q  102 tatccaaac 110  Q
    |||||||||    
T  19860916 tatccaaac 19860924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 33597724 - 33597639
Alignment:
Q  29 tatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaacata 113  Q
    |||||||||||||  ||||||||| ||||||||| ||||||| || ||||||||||||||||| |  |||||||||||||||||||    
T  33597724 tatacattcaaaaataattttgatcaaaactatccaaacaacctttagtttgtttaatcaattttatattattgtatccaaacata 33597639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 13896713 - 13896747
Alignment:
Q  179 attctatctaaagctaaaccaaacacacactaagt 213  Q
    |||||||||||||||||||||||||||||| ||||    
T  13896713 attctatctaaagctaaaccaaacacacacaaagt 13896747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 14037330 - 14037364
Alignment:
Q  179 attctatctaaagctaaaccaaacacacactaagt 213  Q
    |||||||||||||||||||||||||||||| ||||    
T  14037330 attctatctaaagctaaaccaaacacacacaaagt 14037364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 44240663 - 44240773
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgataaaactatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44240663 tatttagctatgtccattttagtaattatacattcaaaaacaattttgataaaactatccaaacaacattcagtttgtttaatcaattctgcattattgt 44240762  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  44240763 atccaaacata 44240773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 8417212 - 8417322
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  8417212 atttagctatgtccattttagtaattctacattcaaaagtaattttgattaaaactatctaaacaacattcaatttgtttaatcaattctgcattattat 8417311  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  8417312 atccaaacata 8417322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 45275942 - 45275832
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| |||||| ||||    
T  45275942 atttagctatgtccattttagtaattatacattcaaaagcaattttgataaaaactatccaaataacattcagtttgtttaatcaattttgcattgttgt 45275843  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  45275842 atccaaacata 45275832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 924590 - 924693
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||    
T  924590 tatgtccattttagtaattatacattcaaaagtaattttgatcaaaactatctaaacaatattcagtttgtttaatcaattatgcattattgcatccaaa 924689  T
Q  110 cata 113  Q
    ||||    
T  924690 cata 924693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 2026065 - 2026176
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2026065 tatttagctatgtccattttagtaattatacattcaaaatcaattttttttaaaactatccaaacaacattcagtttgtttaatcaattctgcattattg 2026164  T
Q  102 tatccaaacata 113  Q
    |||| |||||||    
T  2026165 tatcaaaacata 2026176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 35801849 - 35801746
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| ||||    
T  35801849 tatgtccattttagtaattatacattcaaaaacaattttgataaaaactatccaaacaacattcattttgtttaatcaattctgcattattgtattcaaa 35801750  T
Q  110 cata 113  Q
    ||||    
T  35801749 cata 35801746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 36821166 - 36821058
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||  | |||||||||||||||||||    
T  36821166 atttagttatgtccattttagtaattatacattcaaaagcaatttcgatgaaaactatccaaacaacattcagtttg--tcatcaattctgcattattgt 36821069  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  36821068 atccaaacata 36821058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 17073764 - 17073665
Alignment:
Q  15 tccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaacata 113  Q
    ||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  17073764 tccattttaataattatacattcaaaaacaattttgataaaaactatccaaacaacattatgtttgtttaatcaattctgcattattgtatccaaacata 17073665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 17574506 - 17574605
Alignment:
Q  15 tccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaacata 113  Q
    ||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  17574506 tccattttaataattatacattcaaaaacaattttgataaaaactatccaaacaacattatgtttgtttaatcaattctgcattattgtatccaaacata 17574605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 193949 - 194052
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  193949 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 194048  T
Q  110 cata 113  Q
    ||||    
T  194049 cata 194052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 721553 - 721656
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  721553 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 721652  T
Q  110 cata 113  Q
    ||||    
T  721653 cata 721656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 882660 - 882763
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  882660 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 882759  T
Q  110 cata 113  Q
    ||||    
T  882760 cata 882763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 26575779 - 26575890
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |  | | | |||||||||||  |||||||    
T  26575779 tatttagctatgtccattttagtaattatacattcaaaagcaattttgatcaaaactatccaaacaacatcccttctatctaatcaattctatattattg 26575878  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  26575879 tatccaaacata 26575890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 30211147 - 30211250
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  30211147 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 30211246  T
Q  110 cata 113  Q
    ||||    
T  30211247 cata 30211250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 34773962 - 34773859
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  34773962 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 34773863  T
Q  110 cata 113  Q
    ||||    
T  34773862 cata 34773859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 23018409 - 23018301
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||||||||||  ||||||||||||||||||||||| |||||||||| ||||||||  |||||||| ||| | ||||||||||||| | ||||||||    
T  23018409 tatttagttatgtcggttttagtaattatacattcaaaaacaattttgatcaaaactattcaaacaacactcaatgtgtttaatcaattttacattattg 23018310  T
Q  102 tatccaaac 110  Q
    |||||||||    
T  23018309 tatccaaac 23018301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 629277 - 629380
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| || ||||    
T  629277 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcattcaaa 629376  T
Q  110 cata 113  Q
    ||||    
T  629377 cata 629380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 30982743 - 30982640
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||| ||||||||||||||| |||||||    
T  30982743 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaattaattctgcattattgcatccaaa 30982644  T
Q  110 cata 113  Q
    ||||    
T  30982643 cata 30982640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 13016236 - 13016316
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaatt 90  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||  |||||||||||| | |||||||||||||    
T  13016236 tatgtccattttagtaattatacattcaaaagtaattttgatcaaaactattaaaacaacattcattctgtttaatcaatt 13016316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 2598505 - 2598585
Alignment:
Q  23 agtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    ||||||||||  |||||||| ||||||||| ||||||||| ||||||| |||| |||||||||||||||| ||||||||||    
T  2598505 agtaattatattttcaaaagtaattttgatcaaaactatcaaaacaacgttcattttgtttaatcaattcagcattattgt 2598585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 11071082 - 11071139
Alignment:
Q  56 actatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaacata 113  Q
    |||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  11071082 actatccaaacaacattcaatttatttaatcaattctgtattattgtatccaaacata 11071139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 22936110 - 22936059
Alignment:
Q  6 ttagttatgtccattttagtaa-ttatacattcaaaagcaattttgataaaa 56  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  22936110 ttagctatgtccattttagtaaattatacattcaaaagcaattttgataaaa 22936059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 22934283 - 22934240
Alignment:
Q  53 aaaactatctaaacaacattcagtttgtttaatcaattctgcat 96  Q
    ||||||||| |||||||||| || ||||||||||||||||||||    
T  22934283 aaaactatccaaacaacatttaggttgtttaatcaattctgcat 22934240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 3619220 - 3619164
Alignment:
Q  16 ccattttagtaattatacattcaaaagcaattttga-taaaactatctaaacaacat 71  Q
    ||||||| ||||||||||||| |||| ||||||||| | |||||||| |||||||||    
T  3619220 ccattttggtaattatacatttaaaatcaattttgattcaaactatccaaacaacat 3619164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 42600486 - 42600522
Alignment:
Q  16 ccattttagtaattatacattcaaaagcaattttgat 52  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  42600486 ccattttagtaattatgcattcaaaatcaattttgat 42600522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 46408027 - 46408139
Alignment:
Q  1 tctatttagttatgtccattttagtaattatacattcaaaagcaattttgataaaactatctaaacaacattcagtttgtttaatcaattctgcattatt 100  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46408027 tctatttaactatgttcattttagtaattatacattcaaaagcaattttgataaaactatccaaacaacattcagtttgtttaatcaattctgcattatt 46408126  T
Q  101 gtatccaaacata 113  Q
    |||||||||||||    
T  46408127 gtatccaaacata 46408139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 6706677 - 6706787
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||    
T  6706677 atttagctatgtccattttagtaattatacgttcaaaagcaattttgataaaaactatccaaacaacatttagtttgtttaatcaattctgcattattgt 6706776  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  6706777 atccaaacata 6706787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 16342999 - 16342898
Alignment:
Q  13 tgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaaca 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16342999 tgtccattttagtaattatacgttcaaaagcaattttgataaaaactatccaaacaacattcagtttgtttaatcaattctgcattattgtatccaaaca 16342900  T
Q  112 ta 113  Q
    ||    
T  16342899 ta 16342898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 7385774 - 7385883
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa----ctatctaaacaacattcagtttgtttaatcaattctgcattat 99  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||    ||||| |||||||||||||||||||||||||||||||||||||    
T  7385774 atttagctatctccattttagtaattatacattcaaaagcaattttgataaaaaaaactatccaaacaacattcagtttgtttaatcaattctgcattat 7385873  T
Q  100 tgtatccaaa 109  Q
    ||||||||||    
T  7385874 tgtatccaaa 7385883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 47655238 - 47655135
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgataaaact-atctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| | ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  47655238 tatgtccattttagtaattatacattcaaaaacaattttgataaaaattattcaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 47655139  T
Q  110 cata 113  Q
    ||||    
T  47655138 cata 47655135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 4484772 - 4484662
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||  ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||| |||||||||||||||||||||||    
T  4484772 atttagctatgtttattttagtaattatacattcaaaagcaattttgttaaaaactatccaaacaacattcaatttatttaatcaattctgcattattgt 4484673  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  4484672 atccaaacata 4484662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 50031388 - 50031498
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||||||||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||| |||||||||||    
T  50031388 atttagctatgtccattttagtaattatatattcaaaagtaattttgataaaaactatccaaacaacattcagtatgtttaatcaattatgcattattgt 50031487  T
Q  103 atccaaacata 113  Q
    ||| |||||||    
T  50031488 atcaaaacata 50031498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 11829567 - 11829678
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||   ||||||    
T  11829567 tatttagatatgtccattttagtaattatacatttaaaagcaattttgatcaaaactatccaaacgacattcattttgtttaatcaattctatgttattg 11829666  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  11829667 tatccaaacata 11829678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 31100004 - 31099893
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| | | ||||||||| ||| ||||||||    
T  31100004 tatttagctatgtccattttagtaattatacattcaaaagcaattttgatcaaaaccatccaaacaacattcattctctttaatcaactctacattattg 31099905  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  31099904 tatccaaacata 31099893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 41512701 - 41512811
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||||||||| ||||| ||| |||||||||||||||||||| |||||||||||| |||||    
T  41512701 tatttagctatgtccattttagtgattatacattcaaaatcaattttgatcaaaacaatccaaacaacattcagtttgttttatcaattctgca-tattg 41512799  T
Q  102 tatccaaacata 113  Q
    |||| |||||||    
T  41512800 tatctaaacata 41512811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 46033279 - 46033169
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| |||||| |||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||| ||    
T  46033279 tatttagctatgtcaattttagtaattatacattcaaaatcaattttgataaaaactatccaaacaacattcaatttgtttaatcaattatgcatta-tg 46033181  T
Q  102 tatccaaacata 113  Q
    ||| ||||||||    
T  46033180 tattcaaacata 46033169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 42137240 - 42137128
Alignment:
Q  3 tatttagttatgtccatttt-agtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattatt 100  Q
    ||||||| ||||| |||||| | |||||||||||||||||||||||||||| ||||||||| |||||||||||| | |||||||||||||||||||||||    
T  42137240 tatttagctatgttcatttttaataattatacattcaaaagcaattttgatcaaaactatccaaacaacattcaatctgtttaatcaattctgcattatt 42137141  T
Q  101 gtatccaaacata 113  Q
    |||  ||||||||    
T  42137140 gtacacaaacata 42137128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 5271139 - 5271036
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  5271139 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 5271040  T
Q  110 cata 113  Q
    ||||    
T  5271039 cata 5271036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 15353723 - 15353826
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  15353723 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 15353822  T
Q  110 cata 113  Q
    ||||    
T  15353823 cata 15353826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 26821900 - 26822003
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  26821900 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 26821999  T
Q  110 cata 113  Q
    ||||    
T  26822000 cata 26822003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 27576690 - 27576801
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||| | |||||||||||||||   |||| |    
T  27576690 tatttagctatgtccattttagtaattatacattcaaaagcaaatttgatcaaaactatccaaacaacattcattctgtttaatcaattctatgttatcg 27576789  T
Q  102 tatccaaacata 113  Q
    ||| ||||||||    
T  27576790 tattcaaacata 27576801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 36496013 - 36495910
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  36496013 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 36495914  T
Q  110 cata 113  Q
    ||||    
T  36495913 cata 36495910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 38627782 - 38627885
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  38627782 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 38627881  T
Q  110 cata 113  Q
    ||||    
T  38627882 cata 38627885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 45179882 - 45179993
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| |||||||||||||||||||||||||| |||| |||||||||| |||||| || |||||||||||| |  |||||||||||||| |||||||     
T  45179882 tatttagctatgtccattttagtaattatacatttaaaaacaattttgatcaaaactgtcaaaacaacattcattccgtttaatcaattctacattattt 45179981  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  45179982 tatccaaacata 45179993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 50978459 - 50978356
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  50978459 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 50978360  T
Q  110 cata 113  Q
    ||||    
T  50978359 cata 50978356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 51488008 - 51487905
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  51488008 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 51487909  T
Q  110 cata 113  Q
    ||||    
T  51487908 cata 51487905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 11050662 - 11050558
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactat-ctaaacaacattcagtttgtttaatcaattctgcattattgtatccaa 108  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||| | |||||||||| |||||||||||||||||||||||  |||||| | |    
T  11050662 tatgtcctttttagtaattatacattcaaaagcaattttgatcaaaactatccaaaacaacatttagtttgtttaatcaattctgcatccttgtattcta 11050563  T
Q  109 acata 113  Q
    |||||    
T  11050562 acata 11050558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 1763271 - 1763366
Alignment:
Q  19 ttttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaacata 113  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |  | |||||||||||| ||||||||||||||||||||    
T  1763271 ttttagtaattatacattcaaaaacaattttgatcaaaactatctaaacaacatccattccgcttaatcaattctacattattgtatccaaacata 1763366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 26999924 - 26999821
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||  |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  26999924 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactattcaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 26999825  T
Q  110 cata 113  Q
    ||||    
T  26999824 cata 26999821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 38843880 - 38843983
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| |||||||||  ||||||| ||| | |||||||||||||||||||||||| |||||||    
T  38843880 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccgaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 38843979  T
Q  110 cata 113  Q
    ||||    
T  38843980 cata 38843983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 50521157 - 50521047
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    |||||||||||| ||||||||||||||||| |||||||| |||||||||| ||||||||| |||||||||||| | |||||||| |||||  | ||||||    
T  50521157 tatttagttatg-ccattttagtaattatatattcaaaaacaattttgatcaaaactatccaaacaacattcattctgtttaattaattccacgttattg 50521059  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  50521058 tatccaaacata 50521047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 7592838 - 7592747
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | ||||||||||||||||||||||||    
T  7592838 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattg 7592747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 13509477 - 13509404
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgat--aaaactatctaaacaacattcag 75  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||    
T  13509477 atttagctatgtccattttagtaattatacattcaaaagcaattttgataaaaaactatccaaacaacattcag 13509404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 24076062 - 24076132
Alignment:
Q  44 aattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaacata 113  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24076062 aattttgatcaaaactatccaaacaacattcagtttgtttaatcaattctacattattgtatccaaacata 24076132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 44740674 - 44740760
Alignment:
Q  24 gtaattatacattcaaaagcaattttgataaaact-atctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    ||||||||||||| ||||  ||||||||||||| | ||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  44740674 gtaattatacatttaaaaataattttgataaaaattatccaaacaacattcagtttgtttaatcaattctacattattgtatccaaa 44740760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 35606871 - 35606980
Alignment:
Q  1 tctatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattat 99  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||||||||  ||| || | ||| | |||||||||||||||| |||||    
T  35606871 tctatttagctatgtcaattttcgtaattatacattcaaaagcaattttgatcaaaactattcaaataaaaatcattatgtttaatcaattctgtattat 35606970  T
Q  100 tgtatccaaa 109  Q
    || |||||||    
T  35606971 tgcatccaaa 35606980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 49431183 - 49431285
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||||||||||||||||||| ||||||||| |||||||||  ||| |||||||| |||||| | |||||||||| |||| ||||||||| ||| ||||    
T  49431183 tatgtccattttagtaattatatattcaaaagtaattttgatcgaaattatctaaataacattta-tttgtttaataaattatgcattattatatacaaa 49431281  T
Q  110 cata 113  Q
    ||||    
T  49431282 cata 49431285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 40709152 - 40709205
Alignment:
Q  15 tccattttagtaattatacattcaaaagcaattttgataaaactatctaaacaa 68  Q
    |||||||| ||||| |||| ||||||||||||||||||  ||||||||||||||    
T  40709152 tccattttggtaatgatactttcaaaagcaattttgattcaactatctaaacaa 40709205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 35569351 - 35569299
Alignment:
Q  20 tttagtaattatacattcaaaagcaattttga-taaaactatctaaacaacat 71  Q
    |||||| ||||||||||||||| ||||||||| | |||||||| |||||||||    
T  35569351 tttagtcattatacattcaaaatcaattttgattcaaactatccaaacaacat 35569299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 56561042 - 56561149
Alignment:
Q  6 ttagttatgtccattttagtaattatacattcaaaagcaattttgataaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatc 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||    
T  56561042 ttagctatgtccattttagtaattatacattcaaaagcaattttgataaaactatccaaccaacattcagtttgtttaatcaattctgcgttattgtatc 56561141  T
Q  106 caaacata 113  Q
    ||||||||    
T  56561142 caaacata 56561149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 30417944 - 30417834
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  30417944 atttagttatgtctattttagtaattatacattcaaaagcaattttgataaaaactatccaaacaacattcagtttgtttaatcaattctgcattattgt 30417845  T
Q  103 atccaaacata 113  Q
    ||| |||||||    
T  30417844 atctaaacata 30417834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 50523419 - 50523308
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| ||||||||||||||||||||||| ||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  50523419 tatttagatatgtccattttagtaattataccttcaaaatcaattttgatcaaaactatccaaacaacattcagtttgtttaatcaattctgcattattg 50523320  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  50523319 tatccaaacata 50523308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 28963407 - 28963297
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||    
T  28963407 atttagctatgtccattttagtaattatacattcaaaagcaattttgataaaaactatccaaacaacattcagtttgtttaatcaattttgcattattgt 28963308  T
Q  103 atccaaacata 113  Q
    ||| |||||||    
T  28963307 atctaaacata 28963297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 29385595 - 29385485
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaact-atctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| |||||||||||    
T  29385595 atttagctatgtccattttagtaattatacattcaaaagcaattttgataaaaattatccaaacaacattcagtttgtttaatcaattatgcattattgt 29385496  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  29385495 atccaaacata 29385485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 26459535 - 26459646
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||    
T  26459535 tatttagttatgtccattttagtaattatactttcaaaagtaattttgatcaaaactatccaaacaacattcaatttgtttaatcaattttgcattattg 26459634  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  26459635 tatccaaacata 26459646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 53663184 - 53663074
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||| |||||||||||    
T  53663184 atttagttatgtctattttagtaattatacattcaaaaacaattttgttaaaaactatccaaacaacattcagtttgtttaatcaattttgcattattgt 53663085  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  53663084 atccaaacata 53663074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 16202683 - 16202572
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | | ||||||||||||| ||||||||    
T  16202683 tatttagctatgtccattttagtaattatacattcaaaagcaattttgatcaaaactatccaaacaacattcattatatttaatcaattctacattattg 16202584  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  16202583 tatccaaacata 16202572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 39733368 - 39733479
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| ||||||| |||||||||||||||||||||||  ||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  39733368 tatttagctatgtccgttttagtaattatacattcaaaattaattttgatcaaaactatccaaacaacattcagtttgtttaatcaattctacattattg 39733467  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  39733468 tatccaaacata 39733479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 45106330 - 45106440
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||| |||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||    
T  45106330 atttagctatgtctattttattaattatacattcaaaatcaattttgataaaaactatccaaacaacattcagtttgtttaatcaattttgcattattgt 45106429  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  45106430 atccaaacata 45106440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 22605906 - 22605798
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||||||||| ||||||||||||    
T  22605906 atttagctatgtcaattttagtaattatacattcaaaagcaattttgataaaaactatccaaacaacattca--ttgtttaatcaatactgcattattgt 22605809  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  22605808 atccaaacata 22605798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 38768352 - 38768458
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaactatctaaacaacattcagtttgtttaatcaattctgcattattgta 103  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||| |||||||||||||||||||| |||||||    
T  38768352 atttagctatgtccattttagtaattatacattcaaaagcaattttgataa---tatccaaacaacattcattttgtttaatcaattctgcagtattgta 38768448  T
Q  104 tccaaacata 113  Q
    |||| |||||    
T  38768449 tccagacata 38768458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 53403667 - 53403565
Alignment:
Q  12 atgtccattttagtaattatacattcaaaagcaattttgataaaact-atctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaac 110  Q
    |||||||||||||||||||||||||||||| |||||||||||||| | ||| ||| |||||||||||||||||||||||| |||||||||||||||||||    
T  53403667 atgtccattttagtaattatacattcaaaatcaattttgataaaaattatccaaataacattcagtttgtttaatcaattatgcattattgtatccaaac 53403568  T
Q  111 ata 113  Q
    |||    
T  53403567 ata 53403565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 5937458 - 5937359
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    ||||||| ||||||||||||||||||||||| |||||||||| |||| |||  |||||||||||||||||||||||||||||||||||||||||| ||||    
T  5937458 tatgtccgttttagtaattatacattcaaaatcaattttgatcaaaaatattcaaacaacattcagtttgtttaatcaattctgcattattgtattcaaa 5937359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 51833609 - 51833498
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| | ||||||||||||||| | |||| |    
T  51833609 tatttagctatgtccattttagtaattatacattcaaaagcaattttgttcaaaactatccaaacaacattcattctgtttaatcaattctacgttatcg 51833510  T
Q  102 tatccaaacata 113  Q
    ||| ||||||||    
T  51833509 tattcaaacata 51833498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 28912163 - 28912271
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||  || ||||||||||||  ||||||||    
T  28912163 tatttaattatgtccattttagtaattatacattcaaaagcaa-tttgatcaaaattatctaaacaacattca--ttctttaatcaattccacattattg 28912259  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  28912260 tatccaaacata 28912271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 24035734 - 24035631
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  24035734 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 24035635  T
Q  110 cata 113  Q
    ||||    
T  24035634 cata 24035631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 24247110 - 24247213
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  24247110 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 24247209  T
Q  110 cata 113  Q
    ||||    
T  24247210 cata 24247213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 39382552 - 39382449
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  39382552 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 39382453  T
Q  110 cata 113  Q
    ||||    
T  39382452 cata 39382449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 49128221 - 49128324
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  49128221 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 49128320  T
Q  110 cata 113  Q
    ||||    
T  49128321 cata 49128324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 48407491 - 48407572
Alignment:
Q  33 cattcaaaagcaattttgataaaact-atctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaacata 113  Q
    |||||||||||||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48407491 cattcaaaagcaattttgataaaaattatccaaacaacattcattttgtttaatcaattctgcattattgtatccaaacata 48407572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 36212792 - 36212882
Alignment:
Q  24 gtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaacata 113  Q
    |||||||||||||||||||  ||||| || ||||||||||||||||||| || ||| ||||||||| | |||||||||| |||||||||||    
T  36212792 gtaattatacattcaaaagtgattttaatcaaaactatctaaacaacatacattttatttaatcaaatatgcattattgcatccaaacata 36212882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 8510705 - 8510804
Alignment:
Q  15 tccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaacata 113  Q
    ||||||||| ||||||||||||||||| |||||||||| |||| ||   |||||||||| | | | ||| ||||||| ||||||||||||||||||||||    
T  8510705 tccattttaataattatacattcaaaaacaattttgatcaaaattaatcaaacaacatttattctattttatcaattatgcattattgtatccaaacata 8510804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 49724378 - 49724425
Alignment:
Q  66 caacattcagtttgtttaatcaattctgcattattgtatccaaacata 113  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  49724378 caacattcagtttgtttaatcaattatgcattattgtatccaaacata 49724425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 49724332 - 49724377
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttg 50  Q
    |||||| |||||||||||||||||||||| |||||||| ||||||||    
T  49724332 atttagctatgtccattttagtaattatatattcaaaa-caattttg 49724377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 56561215 - 56561249
Alignment:
Q  179 attctatctaaagctaaaccaaacacacactaagt 213  Q
    ||||||||||||| |||||||||||||||||||||    
T  56561215 attctatctaaagttaaaccaaacacacactaagt 56561249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 38262 - 38372
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  38262 atttagctatgtccattttagtaattaaacattcaaaagcaattttgataaaaactatcgaaacaacattcagtttgtttaatcaattctgcattattgt 38361  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  38362 atccaaacata 38372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 30811260 - 30811371
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  30811260 tatttagctatgtccattttagtaattatacattcaaaatcaattttgatcaaaactatccaaacaacattcagtttgtttaatcaattctgaattattg 30811359  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  30811360 tatccaaacata 30811371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 39252041 - 39252140
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39252041 tatgtccattttagtaattatacattcaaaagcaattttgataaaaactatccaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 39252140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 48254042 - 48253932
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||    
T  48254042 atttagctatgtccattttagtaattatacattcaaaagcaattttgataaaaactatccaaacaacattcagtttgtttaatcaattttgcattattgt 48253943  T
Q  103 atccaaacata 113  Q
    ||| |||||||    
T  48253942 atctaaacata 48253932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 11264250 - 11264360
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||    
T  11264250 atttagctatgttcattttagtaattatacattcaaaagcaattttgataaaaactatccaaacaacattcattttgtttaatcaattctgcatttttgt 11264349  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  11264350 atccaaacata 11264360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 33025329 - 33025219
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||| ||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  33025329 atttagctatgtctattttagtaattatagattcaaaaacaattttgataaaaactatccaaacaacattcagtttgtttaatcaattctgcattattgt 33025230  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  33025229 atccaaacata 33025219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 42275086 - 42275199
Alignment:
Q  6 ttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa------ctatctaaacaacattcagtttgtttaatcaattctgcattat 99  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||      ||||| |||||||||||||||||||||||||||||||||||||    
T  42275086 ttagctatgtccattttagtaattatacattcaaaagcaattttgataaaaaaaaaactatccaaacaacattcagtttgtttaatcaattctgcattat 42275185  T
Q  100 tgtatccaaacata 113  Q
    ||||||||||||||    
T  42275186 tgtatccaaacata 42275199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 33329506 - 33329395
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||| || ||||||||||||||||| ||||||||    
T  33329506 tatttagctatgtccattttagtaattatacattcaaaagcaattttgatcgaaactatccaaacaacatccattttgtttaatcaattctacattattg 33329407  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  33329406 tatccaaacata 33329395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 45151161 - 45151275
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgat-----aaaactatctaaacaacattcagtttgtttaatcaattctgcatta 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||| |||||||||| | ||||||||||||||||| |||||    
T  45151161 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaaaaaaactatccaaacaacatttattttgtttaatcaattctacatta 45151260  T
Q  99 ttgtatccaaacata 113  Q
    |||||||||||||||    
T  45151261 ttgtatccaaacata 45151275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 48181618 - 48181728
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||||||||  ||||||||| ||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  48181618 atttagctatgtccatttcggtaattatatattcaaaagtaattttgataaaaactatccaaacaacattcagtttgtttaatcaattctgcattattgt 48181717  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  48181718 atccaaacata 48181728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 39267207 - 39267096
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||| | || |||||    
T  39267207 tatttagctatgtccattttagtaattatacattcaaaagcagttttgatcaaaactatcaaaacaacatttagtttgtttaatcaattatacactattg 39267108  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  39267107 tatccaaacata 39267096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 42074901 - 42074997
Alignment:
Q  18 attttagtaattatacattcaaaagcaattttgataa-aactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaacata 113  Q
    |||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  42074901 attttagtaattatacattcaaaatcaattttgataagaactatccaaacaacattcagtttgtttaatcaattatgcactattgtatccaaacata 42074997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 50392367 - 50392256
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| ||||||||| ||||||||||||||||||||| |||||||||| |||| |||| |||||| ||||| ||||||||||||||||| ||||||||    
T  50392367 tatttagctatgtccatattagtaattatacattcaaaatcaattttgatcaaaattatccaaacaatattcaatttgtttaatcaattctacattattg 50392268  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  50392267 tatccaaacata 50392256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 44610380 - 44610270
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgataaaactatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||| || |  |||||||||||| | |||||||||    
T  44610380 tatttagctatgtccattttagtaattatacattcaaaatcaattttgatcaaactatccaaacaacatccattccgtttaatcaattttacattattgt 44610281  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  44610280 atccaaacata 44610270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 51230257 - 51230367
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||  |||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||    
T  51230257 atttagctatgtttattttagtaattatacattcaaaatcaaatttgataaaaactatccaaacaacattcagtttgtttaatcaattttgcattattgt 51230356  T
Q  103 atccaaacata 113  Q
    || ||||||||    
T  51230357 attcaaacata 51230367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 41536327 - 41536436
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    |||||||||||||| ||||||||||||||| |||||||| |||||||||| ||||| ||| |||||||||| |||| |||||||||||||| ||||||||    
T  41536327 tatttagttatgtcaattttagtaattatatattcaaaaacaattttgatcaaaaccatccaaacaacatttagttcgtttaatcaattctacattattg 41536426  T
Q  102 tatccaaaca 111  Q
    |||| |||||    
T  41536427 tatctaaaca 41536436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 1528071 - 1528174
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  1528071 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 1528170  T
Q  110 cata 113  Q
    ||||    
T  1528171 cata 1528174  T

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Target: chr3; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 38469746 - 38469849
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  38469746 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 38469845  T
Q  110 cata 113  Q
    ||||    
T  38469846 cata 38469849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 47140883 - 47140780
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  47140883 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 47140784  T
Q  110 cata 113  Q
    ||||    
T  47140783 cata 47140780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 47697255 - 47697358
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  47697255 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 47697354  T
Q  110 cata 113  Q
    ||||    
T  47697355 cata 47697358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 51124903 - 51124800
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  51124903 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgcattattgcatccaaa 51124804  T
Q  110 cata 113  Q
    ||||    
T  51124803 cata 51124800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 28884238 - 28884341
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    ||||||||||| |||||||||||||||||||  ||||||||| ||||||||| |||||||||||| | | ||||||||||| | ||||||||||||||||    
T  28884238 tatgtccatttcagtaattatacattcaaaaataattttgattaaaactatccaaacaacattcattctctttaatcaattatacattattgtatccaaa 28884337  T
Q  110 cata 113  Q
    ||||    
T  28884338 cata 28884341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 52693105 - 52693208
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaa 109  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| | |||||||||||||||| ||||||| |||||||    
T  52693105 tatgtctattttggtaattatacattcaaaagtaattttgatcaaaactatccaaacaacaatcattctgtttaatcaattctgtattattgcatccaaa 52693204  T
Q  110 cata 113  Q
    ||||    
T  52693205 cata 52693208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 44329194 - 44329298
Alignment:
Q  10 ttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaa 108  Q
    ||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| | | ||||||||||| | |||||| |||| |||    
T  44329194 ttatgtcaattttagtaattatacattcaaaagtaattttgatcaaaactatccaaacaacattcattctatttaatcaattttacattatcgtatacaa 44329293  T
Q  109 acata 113  Q
    |||||    
T  44329294 acata 44329298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 40237808 - 40237919
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||  ||||||||||||   |  |||||||||||| | ||||||    
T  40237808 tatttagctatgtccattttaataattatacattcaaaagcaattttgataaaaactattcaaacaacattcatcctaattaatcaattctacgttattg 40237907  T
Q  102 tatccaaacata 113  Q
    ||| ||||||||    
T  40237908 tattcaaacata 40237919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 45488649 - 45488541
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| |||||| ||||||||| |||||||||||||| |||||||||| |||| |||| | |  ||||| |||  |||||||||||| ||||||||||    
T  45488649 tatttagctatgtctattttagtacttatacattcaaaaacaattttgatcaaaaatatccacatgacatttagtgggtttaatcaattttgcattattg 45488550  T
Q  102 tatccaaac 110  Q
    |||||||||    
T  45488549 tatccaaac 45488541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 53686631 - 53686555
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttg 79  Q
    |||||| |||||| ||||||||||||||| ||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  53686631 atttagctatgtctattttagtaattatatattcaaaagtaattttgataaaaactatccaaacaacattcagtttg 53686555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 5104838 - 5104739
Alignment:
Q  15 tccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtatccaaacata 113  Q
    |||||| |||||||  |||||||||||| ||||||||| |||| |||  |||||||||||| ||||||||||||| ||| ||||||| ||||||||||||    
T  5104838 tccattatagtaatcttacattcaaaagtaattttgatcaaaattattcaaacaacattcattttgtttaatcaaatctacattattatatccaaacata 5104739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 40244059 - 40244138
Alignment:
Q  12 atgtccattttagtaattatacattcaaaagcaattttga-taaaactatctaaacaacattcagtttgtttaatcaatt 90  Q
    ||||||||||| ||||||||||||| |||| ||||||||| |||||||||| |||||| ||| | | | |||||||||||    
T  40244059 atgtccattttggtaattatacatttaaaaacaattttgattaaaactatccaaacaatatttattatatttaatcaatt 40244138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 209
Target Start/End: Original strand, 31813925 - 31813955
Alignment:
Q  179 attctatctaaagctaaaccaaacacacact 209  Q
    |||||||||||||||||||||||||||||||    
T  31813925 attctatctaaagctaaaccaaacacacact 31813955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 46798717 - 46798759
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgata 53  Q
    |||||||||||||| |||| |||||||| ||||||||||||||    
T  46798717 tatgtccattttagaaattttacattcagaagcaattttgata 46798759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 49526818 - 49526785
Alignment:
Q  19 ttttagtaattatacattcaaaagcaattttgat 52  Q
    |||||||||||| |||||||||||||||||||||    
T  49526818 ttttagtaattacacattcaaaagcaattttgat 49526785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 23496277 - 23496329
Alignment:
Q  20 tttagtaattatacattcaaaagcaattttga-taaaactatctaaacaacat 71  Q
    |||||| ||||||||||||||| ||||||||| | |||||||| |||||||||    
T  23496277 tttagtcattatacattcaaaatcaattttgattcaaactatccaaacaacat 23496329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 32609 - 32499
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgataaaa-ctatctaaacaacattcagtttgtttaatcaattctgcattattgt 102  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||| |||||||||||    
T  32609 atttagctatgtccattttagtaattatacattcaaaagcaattttgataaaaactatccaaacaacattcattttgtttaatcaattatgcattattgt 32510  T
Q  103 atccaaacata 113  Q
    |||||||||||    
T  32509 atccaaacata 32499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 9323 - 9212
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    ||||||| |||||||||||||||||||||||||| |||| |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  9323 tatttagctatgtccattttagtaattatacatttaaaatcaattttgatcaaaactatccaaacaacattcagtttgtttaatcaattatgcattattg 9224  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  9223 tatccaaacata 9212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 92103 - 92199
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgat---aaaactatctaaacaacattcagtttgtttaatcaattctgcattattgtat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||  ||||||||| |||||||||||||||||||||||||||||||    
T  92103 tatgtccattttagtaattatacattcaaaagcaattttgataaaaaaactatcctaacaacatttagtttgtttaatcaattctgcattattgtat 92199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 4646 - 4757
Alignment:
Q  4 atttagttatgtccattttagtaattatacattcaaaagcaattttgat--aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    |||||| ||||||||||| |||||||||||||||||||| |||||||||  |||| |||| ||||||| ||||| |||||||||||||||| ||||||||    
T  4646 atttagctatgtccatttcagtaattatacattcaaaagaaattttgataaaaaaatatccaaacaacgttcagcttgtttaatcaattctacattattg 4745  T
Q  102 tatccaaacata 113  Q
    ||||||||||||    
T  4746 tatccaaacata 4757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 17377 - 17474
Alignment:
Q  11 tatgtccattttagtaattatacattcaaaagcaattttgataaaa----ctatctaaacaacattcagtttgtttaatcaattctgcattattgtat 104  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||    |||||  ||||||||| |||||||||||||||||||||||||||||||    
T  17377 tatgtccattttagtaattatatattcaaaaacaattttgataaaaaaaactatccgaacaacatttagtttgtttaatcaattctgcattattgtat 17474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 301814 - 301706
Alignment:
Q  3 tatttagttatgtccattttagtaattatacattcaaaagcaattttgat-aaaactatctaaacaacattcagtttgtttaatcaattctgcattattg 101  Q
    |||||| |||||||  |||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||||   ||||||||||||| ||||||||      
T  301814 tatttaattatgtcggttttagtacttatacattcaaaaacaattttgatcaaaactatccaaacaacattcaacgtgtttaatcaattttgcattataa 301715  T
Q  102 tatccaaac 110  Q
    |||||||||    
T  301714 tatccaaac 301706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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