View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17998_low_29 (Length: 236)
Name: NF17998_low_29
Description: NF17998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17998_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32185581 - 32185798
Alignment:
| Q |
1 |
atgaaaacagatggatttatatgataatttatagaaattgaactgcacattgaaaatgaagttggaattaattcattcattgcagctgggggaataaaac |
100 |
Q |
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| T |
32185581 |
atgaaaacagatggatttatatgataatttatagaaattgaactgcacattgaaaatgaagttggaattaattc----attgcagctgggggaataaaac |
32185676 |
T |
|
| Q |
101 |
atggtagggtgtatgcagtgaacaatgacctttcatactaagttggatcaattagaacaaagtatcaattatattaatgtatcctgttacgaatctaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32185677 |
atggtagggtgtatgcagtgaacaatgacctttcatactaagttggatcaattagaacaaagtatcaattatattaatgtatcctgttacgaatctaaat |
32185776 |
T |
|
| Q |
201 |
atatattttgttcactattagt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
32185777 |
atatattttgttcactattagt |
32185798 |
T |
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