View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17998_low_31 (Length: 233)
Name: NF17998_low_31
Description: NF17998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17998_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 33 - 214
Target Start/End: Complemental strand, 5982613 - 5982434
Alignment:
| Q |
33 |
caaaggcatgataatttgaagcaagagaaagatggagacaaatatgtttcaataatcatttattaaagtgatattaatgatcattttacaaatatctttc |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5982613 |
caaaggcatgataatttgaagcaagagaaagatggagaca--tatgtttcaataatcatttattaaagtgatattaatgatcattttacaaatatctttc |
5982516 |
T |
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| Q |
133 |
ataggttacaaggtcaaactcttaccattaccactgagttgacacctcatggacgacaaatactaattacagacattattgc |
214 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5982515 |
atcggttacaaggtcaaactcttaccattaccactgagttgacacctcatggatgacaaatactaattacagacattattgc |
5982434 |
T |
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