View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17998_low_4 (Length: 558)
Name: NF17998_low_4
Description: NF17998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17998_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 13 - 539
Target Start/End: Complemental strand, 45341129 - 45340602
Alignment:
| Q |
13 |
gagaggttggaaccaaaccgaatatggggtgacaaaaaatgcagcaaatctgatattgttatcaatcaaggctcaacagcaccactcccaagtggtatac |
112 |
Q |
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| T |
45341129 |
gagaggttggaaccaaaccgaatatggggggacaaaaaatgcagcaaatctgatattgttatcaatcaaggctcaacagcaccactcccaagtggtatac |
45341030 |
T |
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| Q |
113 |
caacatacacagttgaaatcatgaacatgtgtgtaagtggatgtgacatttctgctattcatcttcgatgtggctggttcagctcagcacgtctcatcaa |
212 |
Q |
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| T |
45341029 |
caacatacacagttgaaatcatgaacatgtgtgtaagtggatgtgacatttctgctattcatcttcgatgtggctggttcagctcagcacgtctcatcaa |
45340930 |
T |
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| Q |
213 |
ccctaagctcttcaaacgcctccgttacaatgactgccttgtcaatgatggtagaccattagtcaatggtggcactgtttctttccagtatgctaatacc |
312 |
Q |
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| T |
45340929 |
ccctaagctcttcaaacgcctccgttacaatgactgccttgtcaatgatggtagaccattagtcaatggtggcactgtttctttccagtatgctaatacc |
45340830 |
T |
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| Q |
313 |
tatctctatccactctcagtttcatctgtagtatgcgtttgaagagtgnnnnnnngtagtgattcttttggacttgtgtatatacacatcacatattata |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45340829 |
tatctctatccactctcagtttcatctgtagtatgcgtttgaagagtgttttttggtagtgattcttttggacttgtgtatatacacatcacatattata |
45340730 |
T |
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| Q |
413 |
ggtatgatcactttcatgtgacacgtgatgaatggatctatagatgaaaggtgacgatgagaacatgaatattgtgcttattacaa-nnnnnnngatgat |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45340729 |
ggtatgatcactttcatgtgacacgtgatgaatggatctatagatgaaaggtgacgatgagaacatgaatattgtgcttattacaattttttttgatgat |
45340630 |
T |
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| Q |
512 |
agattggattagattggaaacatgtggg |
539 |
Q |
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| T |
45340629 |
agattggattagattggaaacatgtggg |
45340602 |
T |
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