View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17998_low_6 (Length: 497)
Name: NF17998_low_6
Description: NF17998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17998_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 172 - 362
Target Start/End: Complemental strand, 17657125 - 17656935
Alignment:
| Q |
172 |
tacttttaaatcattatatttatttttgtatttatgattgttaaaaatacatcaatacataataaagataatttcgtaaaagtgtaatttcttttgataa |
271 |
Q |
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| T |
17657125 |
tacttttaaatcattatatttatttttgtatttatgattgttaaaaatacatcaatagataataaagataatttcgtaaaagtgtaatttcttttgataa |
17657026 |
T |
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| Q |
272 |
tattttattgtattcctaatttgtatgtaaatacttaaaaccacacatattttaaaaccaagggagtgtttcaatattggtgaacgtttca |
362 |
Q |
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| T |
17657025 |
tattttattgtattcctaatttgtatgtaaatacttaaaaccacacatattttaaaacgaagggagtgtttcaatattgatgaacgtttca |
17656935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 425 - 483
Target Start/End: Complemental strand, 17656872 - 17656814
Alignment:
| Q |
425 |
cttgaatctaaaccacgtgaatgtgtcgctcagttggtatagacaatgcgtaatatatg |
483 |
Q |
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| T |
17656872 |
cttgaatctaaaccacgtgaatgtgtcgctcagttggtatggacaatgcataatatatg |
17656814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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