View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17998_low_7 (Length: 461)
Name: NF17998_low_7
Description: NF17998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17998_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Original strand, 50388400 - 50388843
Alignment:
| Q |
10 |
catcatcatcaattaactttgttttttcgaaaaataatttccaatagagctggatttcgatgccggggaaatgatgccattgtccccatataacttagtc |
109 |
Q |
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| T |
50388400 |
catcatcatcaattaactttgttttttcgaaaaataatttccaatagagctggatttcgatgccggggaaatgatgccattgtccccatatatcttagtc |
50388499 |
T |
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| Q |
110 |
taaaaattagaatcaaatccatctgttggtacacaagcaaatgtaaataggaggaaaacttcattttcgttcagacaaatataaaggatcagttgtttag |
209 |
Q |
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| T |
50388500 |
taaaaattagaatcaaatccatctgttggtacacaagcaaatgtaaataggaggaaaacttcattttcgttcagacaaatataaaggatcagttgtttag |
50388599 |
T |
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| Q |
210 |
atactctacaaaaaattcatatttacgtacgatcaaatatttgttttgatactttgtaaatggaaattgatcatttttaaaatgaaatt----------g |
299 |
Q |
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| T |
50388600 |
atactctacaaaaaattcatatttacgtacgatcaaatatttgttttgatactttgtaaatggaaattgatcatttttaaaatgaaattaaatctcaaaa |
50388699 |
T |
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| Q |
300 |
tcattcattttcacttgaagtataatataaccaactagaattcagtttctctcacatgattcatctgctagagcctcagaaatcaaagatataatttgga |
399 |
Q |
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| T |
50388700 |
tcattcattttcacttgaagtataatataaccatctagaattcagtttctctcacatgattcatctgctagagcctcagaaatcaaagatataatttgga |
50388799 |
T |
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| Q |
400 |
ataattaaaattgtttctttgaataaaagataatttggctaggc |
443 |
Q |
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| T |
50388800 |
ataattaaaattgtttctttgaataaaagataatttggctaggc |
50388843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 50383249 - 50383350
Alignment:
| Q |
24 |
aactttgttttttcgaaaaataatttccaatagagctggatttcgatgccggggaaatgatgccattgtccccatataacttagtctaaaaattagaatc |
123 |
Q |
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| T |
50383249 |
aacttcgttttttggaaaaatgatttccattagaaccagat--cgatgccgggtaaatgatgtcattgaccccagatatcttagtctaaaaattagaatc |
50383346 |
T |
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| Q |
124 |
aaat |
127 |
Q |
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|||| |
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| T |
50383347 |
aaat |
50383350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 403
Target Start/End: Original strand, 50383523 - 50383640
Alignment:
| Q |
286 |
ttaaaatgaaattgtcattcattttcacttgaagtataatataaccaactagaattcagtttctctcacatgattcatctgctagagcctcagaaatcaa |
385 |
Q |
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| T |
50383523 |
ttaaaatgaaattgtcattgattttcccttgaagaattatataccgattcagaattccgtttctcttacaggattcataggccagagcctcataagttaa |
50383622 |
T |
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| Q |
386 |
agatataatttggaataa |
403 |
Q |
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| T |
50383623 |
aaatataatttgaaataa |
50383640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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