View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17999_high_3 (Length: 426)
Name: NF17999_high_3
Description: NF17999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17999_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 2018653 - 2019071
Alignment:
| Q |
1 |
ttaccttcgagttcgaggacgtcgaagaagatgctttcgacctcttcctttatagactgtcgttcaaaggaattcaggaactcgatctctgcttggtcac |
100 |
Q |
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| T |
2018653 |
ttaccttcgagttcgaggacgtcgaagaagatgctttcgacctcttcctttatagactgtcgttcaaaggaattcaggaactcgatctctgcttggtcac |
2018752 |
T |
|
| Q |
101 |
tttaatcgaattgccttttggcttctacacttgcaataatcttgtcacacttaagctagaaaatgttactttcaaagatggctcttcctatatcaatttt |
200 |
Q |
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| T |
2018753 |
tttaatcgaattgccttttggcttctacacttgcaataatcttgtcacacttaagctagacaatgttactttcaaagatggctcttcctatatcaatttt |
2018852 |
T |
|
| Q |
201 |
ccattactcaaatccctaaatttgaacgacgtcgtctttggaaaccgtgctaacatgttggacnnnnnnngcggatgtcccaatgttgaagatgtagaag |
300 |
Q |
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| T |
2018853 |
ccattactcaaatcccttaatttgaacgacgtcgtctttggaaatcgtgctaacatgtttgactttttttgcggatgtcccaatgttgaagatgtagaag |
2018952 |
T |
|
| Q |
301 |
tgacttcactatcaatagttaatagtcgcattcctcagccaccagaagagggggttgaagccttaccaaagttggtcagagcaaaaatttcagaattata |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2018953 |
tgacatcactatcaatagttaatagtcgcattcctcagccaccagaagagggggttgaagccttaccaaagttggtcagagcaaaaatttcagaattaca |
2019052 |
T |
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| Q |
401 |
tagcatgttacctttgctt |
419 |
Q |
| |
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||||||||||||||||||| |
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| T |
2019053 |
tagcatgttacctttgctt |
2019071 |
T |
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