View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17999_low_10 (Length: 336)
Name: NF17999_low_10
Description: NF17999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17999_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 36263782 - 36263474
Alignment:
| Q |
11 |
agaatatatatggactcacaaacctcactgcagggctcaatatgcatgttccactcaggtgtgcttgtcctacctccaagcaaattgaaaatggattcaa |
110 |
Q |
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| T |
36263782 |
agaatatatatggactcacaaacctcactgcagggctcaatatgcatgttccactcaggtgtgcttgtcctacctccaagcaaattgaaaatggattcaa |
36263683 |
T |
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| Q |
111 |
gtatattcttacatacctggtctccgaaggagaatatcctgaacttattgctgagatttttggggttgattcacagagcgtcttggatgcaaacaagctt |
210 |
Q |
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| T |
36263682 |
gtatattcttacatacctggtctccgaaggagaatatcctgaacttattgctgagatttttggggttgattcacagagcgtcttggatgcaaacaagctt |
36263583 |
T |
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| Q |
211 |
attgaggatcaagttatcttctacttcactccattgatggtgcctctaaaagacaagccacctaccaagatacaaaggacactaccgccaccatcaacac |
310 |
Q |
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| T |
36263582 |
attgaggatcaagttatcttctacttcactccattgatggtgcctctaaaagacaagccacctaccaagatacaaaggacactaccgccaccatcaacac |
36263483 |
T |
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| Q |
311 |
cactgtcaa |
319 |
Q |
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| T |
36263482 |
cactgtcaa |
36263474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 36256041 - 36255909
Alignment:
| Q |
44 |
ggctcaatatgcatgttccactcagg--tgtgcttgtcctacctccaagcaaattgaaaatggattcaagtatattcttacatacctggtctccgaagga |
141 |
Q |
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| T |
36256041 |
ggctcaatttgcatgttccactcaggggtgtgcttggtccatctccaagcaaatggaaaatggattcaagtatcttcttgcatacttggtctctgaagga |
36255942 |
T |
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| Q |
142 |
----gaatatcctgaacttattgctgagatttt |
170 |
Q |
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| T |
36255941 |
gaatgaatatcctgaacttattgatgagctttt |
36255909 |
T |
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