View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17999_low_13 (Length: 248)
Name: NF17999_low_13
Description: NF17999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17999_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 28587347 - 28587132
Alignment:
| Q |
14 |
aagaatgcacttcctaatattaactcagtaagaggatttgaaatcattgataaagcaaaatctgaggttgagaaagtttgtcccggagttgtgtcttgcg |
113 |
Q |
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| T |
28587347 |
aagagtgcacgtccaaatgttaactcagtaagaggatttgaaatcattgataaagcaaaatctgaggttgagaaagtttgtcccggagttgtgtcttgcg |
28587248 |
T |
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| Q |
114 |
cggacatacttgctgtggcagcacgtgatgcatcattcgcggtaggtggcccgtcatggacagtaaaacttggaagaagagactctaccacagcaagcaa |
213 |
Q |
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| T |
28587247 |
cggacatacttgctgtggcagcacgtgatgcatcattcgcggtaggtggcccgtcatggacagtaaaacttggaagaagagactctacaacagcaagcaa |
28587148 |
T |
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| Q |
214 |
aagtttggccaatacc |
229 |
Q |
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| T |
28587147 |
aagtttggccaatacc |
28587132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 28592533 - 28592397
Alignment:
| Q |
14 |
aagaatgcacttcctaatattaactcagtaagaggatttgaaatcattgataaagcaaaatctgaggttgagaaagtttgtcccggagttgtgtcttgcg |
113 |
Q |
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| T |
28592533 |
aagaatgcacttcctaatattaactcagtaagaggatttgaaatcattgataaagcaaaatctgaggttgagaaaatttgtcccggagttgtgtcttgcg |
28592434 |
T |
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| Q |
114 |
cggacatacttgctgtggcagcacgtgatgcatcatt |
150 |
Q |
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| T |
28592433 |
cggacatactagctgtggcagcacgtgatgcatcatt |
28592397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 32493664 - 32493807
Alignment:
| Q |
7 |
gagtgagaagaatgcacttcctaatattaactcagtaagaggatttgaaatcattgataaagcaaaatctgaggttgagaaagtttgtcccggagttgtg |
106 |
Q |
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| T |
32493664 |
gagtgaaaagagtgcacttccaaatattaactctgtaagaggatttgaagttattgataaagcaaaagctaatgtggagaaagtatgccctggagttgtg |
32493763 |
T |
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| Q |
107 |
tcttgcgcggacatacttgctgtggcagcacgtgatgcatcatt |
150 |
Q |
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| T |
32493764 |
tcttgtgctgacatcgtagcagtagcagctcgtgatgcatcatt |
32493807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 28592301 - 28592231
Alignment:
| Q |
158 |
ggtggcccgtcatggacagtaaaacttggaagaagagactctaccacagcaagcaaaagtttggccaatac |
228 |
Q |
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| T |
28592301 |
ggtggtccatcatggacggtaaaacttggacggagagactctaccacagcaagcaaaagtttggccaatac |
28592231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 28595452 - 28595595
Alignment:
| Q |
7 |
gagtgagaagaatgcacttcctaatattaactcagtaagaggatttgaaatcattgataaagcaaaatctgaggttgagaaagtttgtcccggagttgtg |
106 |
Q |
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| T |
28595452 |
gagtgaaaagagtgcacttccaaatcttaattctgtaagaggtttccaagttattgataaagcaaaagctgatgtagagaaagtatgtcctggagttgtg |
28595551 |
T |
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| Q |
107 |
tcttgcgcggacatacttgctgtggcagcacgtgatgcatcatt |
150 |
Q |
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| T |
28595552 |
tcttgtgctgacattgtagcaatagcggcacgtgatgcatcatt |
28595595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 28595684 - 28595729
Alignment:
| Q |
158 |
ggtggcccgtcatggacagtaaaacttggaagaagagactctacca |
203 |
Q |
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| T |
28595684 |
ggtggtccatcatggacggtaaaacttggaagaagagactctacca |
28595729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 32493905 - 32493945
Alignment:
| Q |
158 |
ggtggcccgtcatggacagtaaaacttggaagaagagactc |
198 |
Q |
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| T |
32493905 |
ggtggtccgtcatggacggtaaaactcggaagaagagactc |
32493945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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