View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17999_low_14 (Length: 236)

Name: NF17999_low_14
Description: NF17999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17999_low_14
NF17999_low_14
[»] chr3 (1 HSPs)
chr3 (16-219)||(15762034-15762237)
[»] chr7 (2 HSPs)
chr7 (17-219)||(13342508-13342708)
chr7 (17-219)||(13331593-13331793)
[»] chr5 (1 HSPs)
chr5 (17-219)||(5672064-5672264)
[»] chr2 (1 HSPs)
chr2 (17-218)||(26661369-26661570)
[»] chr6 (2 HSPs)
chr6 (17-218)||(21481287-21481488)
chr6 (142-218)||(19701045-19701122)
[»] chr8 (2 HSPs)
chr8 (138-215)||(32718005-32718083)
chr8 (138-218)||(10637508-10637589)
[»] scaffold0586 (1 HSPs)
scaffold0586 (138-218)||(9478-9559)
[»] chr1 (1 HSPs)
chr1 (138-218)||(22893663-22893744)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 15762034 - 15762237
Alignment:
Q  16 aagaatagtgaaatcaaaacccaaattagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttag 115  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  15762034 aagaatagtgaaatcaaaacccaaattagcaaatagttgatgaacatacaaagatcatatgatgttttttatatagaagaacatgagtgaaaatgtttag 15762133  T
Q  116 agggaatcagagaaaaagaatggcgggaatgacaaggacaaaaatggtattttattgaagatcatggtttccattccatgggaataaaactttcccaagc 215  Q
     |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15762134 tgggaatcagagaaaaagaatggcacgaatgacaaggacaaaaatggtattttattgaagatcatggtttccattccatgggaataaatctttcccaagc 15762233  T
Q  216 tatt 219  Q
    ||||    
T  15762234 tatt 15762237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 13342508 - 13342708
Alignment:
Q  17 agaatagtgaaatcaaaacccaaattagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttaga 116  Q
    |||| ||||||||||||| |  ||| ||||| ||||||||||||| ||||||||||| || | | |||||||||||| || ||| ||||||||||||||     
T  13342508 agaagagtgaaatcaaaaactcaatcagcaagcagttgatgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagc 13342607  T
Q  117 gggaatcagagaaaaagaatggcgggaatgacaaggacaaaaatggtattttattgaagatcat-ggtttccattccatgggaataaaactttcccaagc 215  Q
    |||||||||||  ||||||| ||||||||||||||| |||||||||| |||||||||||||||| |||||| ||||| ||||||| ||||||||||||||    
T  13342608 gggaatcagag--aaagaatagcgggaatgacaagggcaaaaatggttttttattgaagatcatgggtttcaattcc-tgggaatgaaactttcccaagc 13342704  T
Q  216 tatt 219  Q
    ||||    
T  13342705 tatt 13342708  T

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Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 13331593 - 13331793
Alignment:
Q  17 agaatagtgaaatcaaaacccaaattagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttaga 116  Q
    |||| ||||||||||||| |  ||| ||||| ||||||||||||| ||||||||||| || | | |||||||||||| || ||| ||||||||||||||     
T  13331593 agaagagtgaaatcaaaaactcaatcagcaagcagttgatgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagc 13331692  T
Q  117 gggaatcagagaaaaagaatggcgggaatgacaaggacaaaaatggtattttattgaagatcat-ggtttccattccatgggaataaaactttcccaagc 215  Q
    |||||||||||  ||||||| ||||||||| ||||| |||||||||| |||||||||||||||| |||||| ||||| ||||||| ||||||||||||||    
T  13331693 gggaatcagag--aaagaatagcgggaatggcaagggcaaaaatggttttttattgaagatcatgggtttcaattcc-tgggaatgaaactttcccaagc 13331789  T
Q  216 tatt 219  Q
    ||||    
T  13331790 tatt 13331793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 5672064 - 5672264
Alignment:
Q  17 agaatagtgaaatcaaaacccaaattagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttaga 116  Q
    |||| ||||||||||||| |  ||| ||||| ||||||||||||| ||||||||||| || | | |||||||||||| || ||| ||||||||||||||     
T  5672064 agaagagtgaaatcaaaaactcaatcagcaagcagttgatgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagc 5672163  T
Q  117 gggaatcagagaaaaagaatggcgggaatgacaaggacaaaaatggtattttattgaagatcat-ggtttccattccatgggaataaaactttcccaagc 215  Q
    |||||||||||  ||||||| ||||||||||||||| |||||||||| |||||||||||||||| |||||| ||||| ||||||| ||||||||||||||    
T  5672164 gggaatcagag--aaagaatagcgggaatgacaagggcaaaaatggttttttattgaagatcatgggtttcaattcc-tgggaatgaaactttcccaagc 5672260  T
Q  216 tatt 219  Q
    ||||    
T  5672261 tatt 5672264  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 26661570 - 26661369
Alignment:
Q  17 agaatagtgaaatcaaaacccaaattagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttaga 116  Q
    |||| ||||||||||||| || |||| |||| ||||||||| ||| ||||||||||| || |  |||||||| |||| |  ||| ||||||||||||||     
T  26661570 agaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagc 26661471  T
Q  117 gggaatcagagaaaaagaatggcgggaatgacaaggacaaaaatggtattttattgaagatcatggtttccattccatgggaataaaactttcccaagct 216  Q
    |||||||||||||||||||| ||||||||| |||||  | ||  |||||||| ||| ||||||||||||  ||||| ||| ||||||||||||||| |||    
T  26661470 gggaatcagagaaaaagaatagcgggaatggcaagggtagaagaggtattttgttggagatcatggtttttattccctggaaataaaactttcccatgct 26661371  T
Q  217 at 218  Q
    ||    
T  26661370 at 26661369  T

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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 21481488 - 21481287
Alignment:
Q  17 agaatagtgaaatcaaaacccaaattagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttaga 116  Q
    |||| ||||||||||||| || |||| ||||  |||||||| ||| ||||||||||| || |  |||||||| |||| |  ||| ||||||||||||||     
T  21481488 agaagagtgaaatcaaaaacccaattggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagc 21481389  T
Q  117 gggaatcagagaaaaagaatggcgggaatgacaaggacaaaaatggtattttattgaagatcatggtttccattccatgggaataaaactttcccaagct 216  Q
    |||||||||||||||||||| || |||||| |||||  | ||  |||||||| ||| ||||||||||||  ||||  ||||||||||||||||||| |||    
T  21481388 gggaatcagagaaaaagaatagcaggaatggcaagggtagaagaggtattttgttggagatcatggtttttattctctgggaataaaactttcccatgct 21481289  T
Q  217 at 218  Q
    ||    
T  21481288 at 21481287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 19701122 - 19701045
Alignment:
Q  142 gaatgacaaggacaaaaatggtattttattgaagatcatgg-tttccattccatgggaataaaactttcccaagctat 218  Q
    ||||| |||||  ||| ||||||||||||| |||||||||| |||||||| | |||||||||||||||||||||||||    
T  19701122 gaatggcaagggaaaatatggtattttattcaagatcatgggtttccatttcctgggaataaaactttcccaagctat 19701045  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 32718005 - 32718083
Alignment:
Q  138 gcgggaatgacaaggacaaaaatggtattttattgaagatcat-ggtttccattccatgggaataaaactttcccaagc 215  Q
    ||||||||| ||||| |||| ||||||||||||| |||||||| |||||||||| | ||||||||||||||||||||||    
T  32718005 gcgggaatggcaagggcaaatatggtattttattcaagatcatgggtttccatttcctgggaataaaactttcccaagc 32718083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 10637589 - 10637508
Alignment:
Q  138 gcgggaatgacaaggacaaaaatggtattttattgaagatcatgg-tttccattccatgggaataaaactttcccaagctat 218  Q
    ||||||||| ||||| |||| ||||||||||||| ||| |||||| |||||||| | |||||||||||||||||||||||||    
T  10637589 gcgggaatggcaagggcaaatatggtattttattcaagttcatgggtttccatttcctgggaataaaactttcccaagctat 10637508  T

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Target: scaffold0586 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 9559 - 9478
Alignment:
Q  138 gcgggaatgacaaggacaaaaatggtattttattgaagatcatgg-tttccattccatgggaataaaactttcccaagctat 218  Q
    ||||||||| |||||  ||| ||||||||||||| |||||||||| |||||||| | |||||||||||||||||||||||||    
T  9559 gcgggaatggcaagggaaaatatggtattttattcaagatcatgggtttccatttcctgggaataaaactttcccaagctat 9478  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 22893744 - 22893663
Alignment:
Q  138 gcgggaatgacaaggacaaaaatggtattttattgaagatcatgg-tttccattccatgggaataaaactttcccaagctat 218  Q
    ||||||||| |||||  ||| ||||||||||||| |||||||||| |||||||| | |||||||||||||||||||||||||    
T  22893744 gcgggaatggcaagggaaaatatggtattttattcaagatcatgggtttccatttcctgggaataaaactttcccaagctat 22893663  T

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