View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17999_low_17 (Length: 232)

Name: NF17999_low_17
Description: NF17999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17999_low_17
NF17999_low_17
[»] chr6 (17 HSPs)
chr6 (1-232)||(13942398-13942629)
chr6 (1-232)||(14016414-14016645)
chr6 (62-232)||(14026528-14026698)
chr6 (4-232)||(13471500-13471728)
chr6 (4-191)||(14086042-14086229)
chr6 (10-225)||(13873809-13874024)
chr6 (1-232)||(13891504-13891735)
chr6 (140-232)||(14048628-14048720)
chr6 (77-232)||(13861403-13861558)
chr6 (10-167)||(14111875-14112032)
chr6 (62-114)||(14086272-14086324)
chr6 (62-114)||(14112081-14112133)
chr6 (10-60)||(14048720-14048770)
chr6 (62-114)||(13471405-13471457)
chr6 (62-114)||(13942669-13942721)
chr6 (41-114)||(14016685-14016758)
chr6 (62-114)||(13891412-13891464)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 13942629 - 13942398
Alignment:
Q  1 tcctgtagtcttccaaaattgagagaactaagattatcttataacaacttcatatcattcgtgatatttcagtgggtgtcaaccataagttccaatcttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||| |||| ||||||| ||||| | || |   |||||| |||||||||||||||||    
T  13942629 tcctgtagtcttccaaaattgagagaactaagattatcttggaacaagttcacatcattcatgatactccattcattgtcaaacataagttccaatcttg 13942530  T
Q  101 ttaagcttgacctttctaacaaccttttggaggatcctccatcatatggttatggcacagtgatgaactcgcttcaggagattgacctatcaaacaataa 200  Q
    || |||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13942529 ttgagcttgacctttctcagaaccgtttggaggatcctccatcatatggttatggcacagtgatgaactcgcttcaggagattgacctatcatacaataa 13942430  T
Q  201 attgaagggtgtggcgtttaaatccttcatga 232  Q
    ||||||||||||||| ||||||||||||||||    
T  13942429 attgaagggtgtggcatttaaatccttcatga 13942398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 14016645 - 14016414
Alignment:
Q  1 tcctgtagtcttccaaaattgagagaactaagattatcttataacaacttcatatcattcgtgatatttcagtgggtgtcaaccataagttccaatcttg 100  Q
    |||||||||||||||||| ||||| || ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| ||||||||||||     
T  14016645 tcctgtagtcttccaaaaatgagaaaattaagattatcttataacaagttcatatcattcatgatatttcagtgggtgtcaaacatgagttccaatctta 14016546  T
Q  101 ttaagcttgacctttctaacaaccttttggaggatcctccatcatatggttatggcacagtgatgaactcgcttcaggagattgacctatcaaacaataa 200  Q
    || |||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| || |||||||   ||||||||||||| |||||    
T  14016545 ttgagcttgacctttctaacaaccttttggaggttcttccatcatatggttatggcatagtgatgaagtcccttcaggtacttgacctatcaaataataa 14016446  T
Q  201 attgaagggtgtggcgtttaaatccttcatga 232  Q
    ||||||||| ||||| ||||||||||||||||    
T  14016445 attgaagggcgtggcatttaaatccttcatga 14016414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 62 - 232
Target Start/End: Complemental strand, 14026698 - 14026528
Alignment:
Q  62 tgatatttcagtgggtgtcaaccataagttccaatcttgttaagcttgacctttctaacaaccttttggaggatcctccatcatatggttatggcacagt 161  Q
    ||||||| || |||||||||| |||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  14026698 tgatattccattgggtgtcaaacataagttccaatcttgtaaagcttgacctttctatgaaccttttggaggatcctccatcatatggttatggcacagt 14026599  T
Q  162 gatgaactcgcttcaggagattgacctatcaaacaataaattgaagggtgtggcgtttaaatccttcatga 232  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  14026598 gatgaactcgcttcaggagattgacctatcatacaataaactgaagggtgtggcgtttaagtccttcatga 14026528  T

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Target: chr6; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 13471500 - 13471728
Alignment:
Q  4 tgtagtcttccaaaattgagagaactaagattatcttataacaacttcatatcattcgtgatatttcagtgggtgtcaaccataagttccaatcttgtta 103  Q
    |||||||||||||||||||||||||||||| || || |||||| ||||| ||||||| ||||||| ||||   ||||||  ||||||||||||||||||     
T  13471500 tgtagtcttccaaaattgagagaactaagactagctgataacagcttcacatcattcatgatattccagtcattgtcaaatataagttccaatcttgttg 13471599  T
Q  104 agcttgacctttctaacaaccttttggaggatcctccatcatatggttatggcacagtgatgaactcgcttcaggagattgacctatcaaacaataaatt 203  Q
    ||||| ||||| ||   |||||  |||||| ||| |||||| |||||||||||||||||||  | || |||||||   ||||||||||| | ||||||||    
T  13471600 agcttaaccttgctggaaacctcctggaggctcccccatcacatggttatggcacagtgatacagtctcttcaggtacttgacctatcatataataaatt 13471699  T
Q  204 gaagggtgtggcgtttaaatccttcatga 232  Q
    |||||||||||| ||||||||||||||||    
T  13471700 gaagggtgtggcatttaaatccttcatga 13471728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 14086229 - 14086042
Alignment:
Q  4 tgtagtcttccaaaattgagagaactaagattatcttataacaacttcatatcattcgtgatatttcagtgggtgtcaaccataagttccaatcttgtta 103  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||  ||||||| ||||||| || | |||||||| ||||||||||||||||||||    
T  14086229 tgtaggctaccaaaattgagagaactaagattatcttataacaacttcgcatcattcatgatattccaattggtgtcaaacataagttccaatcttgtta 14086130  T
Q  104 agcttgacctttctaacaaccttttggaggatcctccatcatatggttatggcacagtgatgaactcgcttcaggagattgacctatc 191  Q
    |||||||| ||||    ||||  ||| ||||||||||||||||||  ||||||| ||| ||||| || ||| ||||  ||||||||||    
T  14086129 agcttgacatttcatttaaccacttgaaggatcctccatcatatgactatggcatagttatgaagtctcttgaggaacttgacctatc 14086042  T

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Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 13873809 - 13874024
Alignment:
Q  10 cttccaaaattgagagaactaagattatcttataacaacttcatatcattcgtgatatttcagtgggtgtcaaccataagttccaatcttgttaagcttg 109  Q
    |||||||| ||||||||||||| ||||| | ||||||  |||| ||||||| || |||| |||||| | |||| ||||||||||||||||||||||||||    
T  13873809 cttccaaatttgagagaactaatattatatgataacatgttcacatcattcatggtattccagtggctttcaaacataagttccaatcttgttaagcttg 13873908  T
Q  110 acctttctaacaaccttttggaggatcctccatcatatggttatggcacagtgatgaactcgcttcaggagattgacctatcaaacaataaattgaaggg 209  Q
    ||||||| |||||||| ||||||||| ||||||||||||  |||| || ||| ||||  || ||| ||||  ||||||||||| | ||||  ||||||||    
T  13873909 acctttccaacaacctcttggaggattctccatcatatgactatgacatagttatgaggtctcttgaggaacttgacctatcacaaaatagtttgaaggg 13874008  T
Q  210 tgtggcgtttaaatcc 225  Q
    || |  ||||||||||    
T  13874009 tgggatgtttaaatcc 13874024  T

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Target: chr6; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 13891504 - 13891735
Alignment:
Q  1 tcctgtagtcttccaaaattgagagaactaagattatcttataacaacttcatatcattcgtgatatttcagtgggtgtcaaccataagttccaatcttg 100  Q
    |||| ||| ||||||| ||||||||||||||||||||||  |||||  |||| ||||||| ||||| | |||| | |||||| |||||||||||||||||    
T  13891504 tcctataggcttccaagattgagagaactaagattatctagtaacatgttcacatcattcatgatactccagtcgttgtcaaacataagttccaatcttg 13891603  T
Q  101 ttaagcttgacctttctaacaaccttttggaggatcctccatcatatggttatggcacagtgatgaactcgcttcaggagattgacctatcaaacaataa 200  Q
    |||| ||||||||||||   ||| | ||||||| |||||||||  |||  ||||||  ||||||||| || ||| |||   ||||||| ||| | ||||     
T  13891604 ttaaacttgacctttctttaaacttcttggaggctcctccatccaatgtctatggcttagtgatgaagtctcttgaggtacttgacctgtcagaaaatag 13891703  T
Q  201 attgaagggtgtggcgtttaaatccttcatga 232  Q
    ||||||||||| || |||||||| ||||||||    
T  13891704 attgaagggtggggtgtttaaattcttcatga 13891735  T

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Target: chr6; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 14048720 - 14048628
Alignment:
Q  140 catcatatggttatggcacagtgatgaactcgcttcaggagattgacctatcaaacaataaattgaagggtgtggcgtttaaatccttcatga 232  Q
    |||||||| ||||||||||||||||||| || ||||||| | ||||||||||| | |||||||||||||||| ||| ||||||||||||||||    
T  14048720 catcatatagttatggcacagtgatgaagtcccttcaggtgcttgacctatcacataataaattgaagggtggggcatttaaatccttcatga 14048628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 232
Target Start/End: Original strand, 13861403 - 13861558
Alignment:
Q  77 tgtcaaccataagttccaatcttgttaagcttgacctttctaacaaccttttggaggatcctccatcatatggttatggcacagtgatgaactcgcttca 176  Q
    |||||| ||||||||||||||||||| ||||||||||||||  |||||  ||||||| ||||||||||  ||  ||||||| ||||||||| || ||| |    
T  13861403 tgtcaaacataagttccaatcttgttgagcttgacctttctttcaaccacttggaggctcctccatcaattgactatggcatagtgatgaattctcttga 13861502  T
Q  177 ggaga-ttgacctatcaaacaataaattgaagggtgtggcgtttaaatccttcatga 232  Q
     |||| ||| |||||||   |||| ||||||||||| || |||||||||||||||||    
T  13861503 -gagacttggcctatcaggtaatagattgaagggtggggtgtttaaatccttcatga 13861558  T

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Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 14112032 - 14111875
Alignment:
Q  10 cttccaaaattgagagaactaagattatcttataacaacttcatatcattcgtgatatttcagtgggtgtcaaccataagttccaatcttgttaagcttg 109  Q
    |||||||||||||||||||||| ||||  | ||||||| |||| ||| ||  ||||| | ||||   |||||| ||||||||  ||||||||| ||||||    
T  14112032 cttccaaaattgagagaactaatattaagtaataacaagttcacatctttgatgatactccagtctttgtcaaacataagttataatcttgttgagcttg 14111933  T
Q  110 acctttctaacaaccttttggaggatcctccatcatatggttatggcacagtgatgaa 167  Q
    ||||||||  ||||   ||||||| ||||||||||  ||  ||||||| |||||||||    
T  14111932 acctttctgtcaacaacttggaggctcctccatcaagtgactatggcatagtgatgaa 14111875  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 14086324 - 14086272
Alignment:
Q  62 tgatatttcagtgggtgtcaaccataagttccaatcttgttaagcttgacctt 114  Q
    ||||||| ||||||||||||| |||||||||||||||||||  ||||||||||    
T  14086324 tgatattccagtgggtgtcaaacataagttccaatcttgttttgcttgacctt 14086272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 14112133 - 14112081
Alignment:
Q  62 tgatatttcagtgggtgtcaaccataagttccaatcttgttaagcttgacctt 114  Q
    |||||||| |||||||||||| |||||||||||||||||| | ||||||||||    
T  14112133 tgatatttgagtgggtgtcaaacataagttccaatcttgtaaggcttgacctt 14112081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 14048770 - 14048720
Alignment:
Q  10 cttccaaaattgagagaactaagattatcttataacaacttcatatcattc 60  Q
    |||||||||||||||||||||||| ||||| ||||||| |||| |||||||    
T  14048770 cttccaaaattgagagaactaagaatatctaataacaagttcacatcattc 14048720  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 13471405 - 13471457
Alignment:
Q  62 tgatatttcagtgggtgtcaaccataagttccaatcttgttaagcttgacctt 114  Q
    ||||||||||   |||||||| ||||||||||||||||||| |||||||||||    
T  13471405 tgatatttcatatggtgtcaaacataagttccaatcttgttgagcttgacctt 13471457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 13942721 - 13942669
Alignment:
Q  62 tgatatttcagtgggtgtcaaccataagttccaatcttgttaagcttgacctt 114  Q
    ||||||| || |||||||||| ||||||||| ||||||||| |||||||||||    
T  13942721 tgatattccaatgggtgtcaaacataagttctaatcttgttgagcttgacctt 13942669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 14016758 - 14016685
Alignment:
Q  41 ataacaacttcatatcattcgtgatatttcagtgggtgtcaaccataagttccaatcttgttaagcttgacctt 114  Q
    ||||||||||   ||||| | ||||||| || |||||||||| ||||||| | ||||||||| |||||||||||    
T  14016758 ataacaactttgcatcatccttgatattccattgggtgtcaaacataagtgctaatcttgttgagcttgacctt 14016685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 13891412 - 13891464
Alignment:
Q  62 tgatatttcagtgggtgtcaaccataagttccaatcttgttaagcttgacctt 114  Q
    ||||||| ||||||||||||| ||| ||| |||||||||| | ||||||||||    
T  13891412 tgatattccagtgggtgtcaaacattagtcccaatcttgtaaggcttgacctt 13891464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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