View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17999_low_19 (Length: 222)

Name: NF17999_low_19
Description: NF17999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17999_low_19
NF17999_low_19
[»] chr3 (1 HSPs)
chr3 (9-222)||(15761846-15762057)
[»] chr5 (3 HSPs)
chr5 (125-217)||(5671989-5672081)
chr5 (13-73)||(5671328-5671388)
chr5 (32-76)||(13755907-13755951)
[»] chr7 (4 HSPs)
chr7 (125-217)||(13331517-13331610)
chr7 (125-217)||(13342432-13342525)
chr7 (13-73)||(13330881-13330941)
chr7 (13-73)||(13341796-13341856)
[»] scaffold0586 (1 HSPs)
scaffold0586 (124-213)||(9642-9731)
[»] chr8 (2 HSPs)
chr8 (124-213)||(32717808-32717897)
chr8 (124-213)||(10637697-10637786)
[»] chr6 (2 HSPs)
chr6 (124-217)||(21481471-21481564)
chr6 (124-213)||(19701209-19701298)
[»] chr2 (2 HSPs)
chr2 (124-217)||(26661553-26661646)
chr2 (138-213)||(6049962-6050037)
[»] chr1 (2 HSPs)
chr1 (124-213)||(22893852-22893941)
chr1 (138-213)||(44306179-44306253)
[»] chr4 (1 HSPs)
chr4 (138-213)||(13893703-13893778)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 15761846 - 15762057
Alignment:
Q  9 gaagaaaattacagggttgaagtaaagatctataaatcctactcatagaccaaagatattctgttcaatgttgagacaaggcaataaacaacaatagcag 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15761846 gaagaaaattacagggttgaagtaaagatctataaatcctactcatagaccaaagatattttgttcaatgttgagacaaggcaataaacaacaatagcag 15761945  T
Q  109 aaagnnnnnnnnnnncagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtg 208  Q
    ||             |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15761946 aa--gaaaaaaaaaacagagaaaatataccaatcaccaaatctatgttgagtaatagaagaattgagatgaaattagatggtactttgaaaagaatagtg 15762043  T
Q  209 aaatcaaaacccaa 222  Q
    ||||||||||||||    
T  15762044 aaatcaaaacccaa 15762057  T

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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 5671989 - 5672081
Alignment:
Q  125 agagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaa 217  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |||||||||||||    
T  5671989 agagaaattttaccaatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaa 5672081  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 5671328 - 5671388
Alignment:
Q  13 aaaattacagggttgaagtaaagatctataaatcctactcatagaccaaagatattctgtt 73  Q
    |||||| |||||||| || ||||||||||||||||||||||||| ||||||||||| ||||    
T  5671328 aaaattgcagggttgcaggaaagatctataaatcctactcataggccaaagatattttgtt 5671388  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 13755907 - 13755951
Alignment:
Q  32 aaagatctataaatcctactcatagaccaaagatattctgttcaa 76  Q
    |||||||||||||||  |||||||||||||||||||| |||||||    
T  13755907 aaagatctataaatctcactcatagaccaaagatattatgttcaa 13755951  T

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Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 13331517 - 13331610
Alignment:
Q  125 agagaaattata-ccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaa 217  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |||||||||||||    
T  13331517 agagaaattttatccaatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaa 13331610  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 13342432 - 13342525
Alignment:
Q  125 agagaaattata-ccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaa 217  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |||||||||||||    
T  13342432 agagaaattttatccaatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaa 13342525  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 13330881 - 13330941
Alignment:
Q  13 aaaattacagggttgaagtaaagatctataaatcctactcatagaccaaagatattctgtt 73  Q
    |||||| |||||||| || ||||||||||||||||||||||||| ||||||||||| ||||    
T  13330881 aaaattgcagggttgcaggaaagatctataaatcctactcataggccaaagatattttgtt 13330941  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 13341796 - 13341856
Alignment:
Q  13 aaaattacagggttgaagtaaagatctataaatcctactcatagaccaaagatattctgtt 73  Q
    |||||| |||||||| || ||||||||||||||||||||||||| ||||||||||| ||||    
T  13341796 aaaattgcagggttgcaggaaagatctataaatcctactcataggccaaagatattttgtt 13341856  T

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Target: scaffold0586 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 124 - 213
Target Start/End: Complemental strand, 9731 - 9642
Alignment:
Q  124 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatc 213  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||| |||||||||    
T  9731 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatc 9642  T

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Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 32717808 - 32717897
Alignment:
Q  124 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatc 213  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||| |||||||||    
T  32717808 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatc 32717897  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 213
Target Start/End: Complemental strand, 10637786 - 10637697
Alignment:
Q  124 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatc 213  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||||| |||| |||||||||    
T  10637786 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgataccttgaagagaagagtgaaatc 10637697  T

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Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 124 - 217
Target Start/End: Complemental strand, 21481564 - 21481471
Alignment:
Q  124 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaa 217  Q
    ||||||| | ||| |||||||||||||||||||||||||||||||||||  |||||||||||||| ||| ||||| |||| |||||||||||||    
T  21481564 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgttaccttgaatagaagagtgaaatcaaaa 21481471  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 213
Target Start/End: Complemental strand, 19701298 - 19701209
Alignment:
Q  124 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatc 213  Q
    ||||||||| |||  ||||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||| |||||||||    
T  19701298 cagagaaatgatataaatcaacaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaaaagtgaaatc 19701209  T

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Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 124 - 217
Target Start/End: Complemental strand, 26661646 - 26661553
Alignment:
Q  124 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaa 217  Q
    ||||||| | ||| |||||||||||||||||||||||||||||||||||  |||||||||||||| ||| ||||| |||| |||||||||||||    
T  26661646 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaa 26661553  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 6050037 - 6049962
Alignment:
Q  138 caatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatc 213  Q
    ||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||| |||| |||||||||    
T  6050037 caatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatc 6049962  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 213
Target Start/End: Complemental strand, 22893941 - 22893852
Alignment:
Q  124 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatc 213  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||||| |||| |||||||||    
T  22893941 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgttaccttgaagagaagagtgaaatc 22893852  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 44306253 - 44306179
Alignment:
Q  138 caatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatc 213  Q
    |||| |||||||||||||||||||||||||||||||| | | |||| |||||||| ||||| |||| |||||||||    
T  44306253 caatgaccaaatctatgttgagtaatggaagaattgaaaag-aatttgatggtaccttgaagagaagagtgaaatc 44306179  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 13893703 - 13893778
Alignment:
Q  138 caatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatc 213  Q
    ||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||| |||| |||||||||    
T  13893703 caatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatc 13893778  T

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