View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17999_low_20 (Length: 207)
Name: NF17999_low_20
Description: NF17999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17999_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 30346183 - 30346014
Alignment:
| Q |
21 |
atcaggtcttctagctaaatcctgaaaaatacttgattgcaaactctcaagtgctattccatgccaagacactacaagatttgaaagattcctagctaca |
120 |
Q |
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| T |
30346183 |
atcaggtcttctagctaaatcctgaaaaatacttgattgcaaactctcaagtgctattccatgccaagacactacaagatttgaaagattcctagctaca |
30346084 |
T |
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| Q |
121 |
taatgaggaagtgcaacactttctgaatgaataacatcaaatggttctttcttgttctcttcctgatatt |
190 |
Q |
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| T |
30346083 |
taatgaggaagtgcaacactttctgaatgaataacatcaaatggttctttcttgttctcttcctgatatt |
30346014 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 166
Target Start/End: Original strand, 10841481 - 10841604
Alignment:
| Q |
43 |
tgaaaaatacttgattgcaaactctcaagtgctattccatgccaagacactacaagatttgaaagattcctagctacataatgaggaagtgcaacacttt |
142 |
Q |
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| T |
10841481 |
tgaaaaatgctcgattgcaagctttccaatgctatgccatgccaggatacaacaagatttggaagatcttttgcaagccaatgaggaagtgctacacttt |
10841580 |
T |
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| Q |
143 |
ctgaatgaataacatcaaatggtt |
166 |
Q |
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| T |
10841581 |
ctgaatgaacaacatcaaaaggtt |
10841604 |
T |
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